- Identification and evolution analysis of the JAZ gene family in maize. - To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.. - The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.. - Identification of the JAZ family in the maize genome Thirty-six putative protein sequences were obtained from maize genomes by searching the ZIM [9] domain from GRASSIUM (Grass Regulatory Information Ser- vices, https://www.grassius.org) database [37]. - a Nomenclature of JAZ subfamily was based on the conserved domains, possible paralogous proteins were grouped togather based on maizesequence.org. - c Number of putative splicing pattern based on maizesequence.org. - Sequence comparison and structure analysis of the maize JAZ genes. - 2 Bioinformatic analysis of the ZmJAZ family. - Interspecies synteny analysis and expansion patterns of the JAZ genes. - Strong purifying selection for JAZ genes in maize. - The phylogenetic relationship of the JAZ genes. - Expansion pattern of the JAZ genes. - To identify candidate JAZ family members in monocots, the GRASSIUM (Grass Regulatory Information Services, https://www.grassius.org) [37] database was used to search ZIM [9] from four published plant genomes, in- cluding maize (Zea mays), rice (Oryza sativa japonica), sorghum (Sorghum bicolor), and Brachypodium (Brachy- podium distachyon). - Previously identified and published JAZ mem- bers in Arabidopsis (Arabidopsis thaliana) were retrieved from TAIR (https://www.arabidopsis.org) [94], maize genome data were obtained from Gramene using B73 inbred line (https://www.maizesequence.org) [95], r i c e g e n o m e d a t a w e r e f r o m T I G R ( h t t p. - gramene.org) [95] (Supplemental Table 1). - Chromosome location, ortholog, and paralog informa- tion for the ZmJAZ genes were obtained from Mai- zeGDB (https://www.maizegdb.org/) [40]. - http://gsds.gao-lab.org/) [102] for maize JAZ genes. - org/10.1186/s . - The datasets generated and/or analyzed during the current study are available in the TreeBASE repository, https://purl.org/phylo/treebase/. - https://doi.org/10.1146/annurev-cellbio . - https://doi.. - org/10.1146/annurev-arplant . - https://doi.org/10.103 8/nchembio.161.. - https://doi.org/10.1016/j.tpla nts . - https://doi.org/10.1038/nature14661.. - https://doi.org/10.1105/tpc.18.00405.. - https://doi.org/10.1016/j.phytochem . - org/10.1016/j.tplants . - https://doi.org/10.12 71/bbb.64.1402.. - https://doi.org/10.1016/j.tplants . - https://doi.org/10.1016/j.ygeno . - https://doi.org/10.1371/journal.pone.0044465.. - doi.org/10.1038/nature05960.. - https://doi.org/10.1038/nature06006.. - https://doi.org/10.1111/tpj.12841.. - https://doi.org/10.1104/pp . - https://doi.org/10.1146/annurev.arplant.59.. - https://doi.org/10.1105/tpc.107.. - https://doi.org/10.1093/pcp/pcn077.. - https://doi.org/10.1371/journal.pone.0057868.. - https://doi.org/10.1093/pcp/. - https://doi.org/1 0.1371/journal.pone.0075728.. - https://doi.org/10.1105/. - https://doi.org/10.1111/. - https://doi.org/10.1016/j.plantsci . - https://doi.org/10.1007/s . - https://doi.org/10.1371/journal.. - org/10.1017/S . - doi.org/10.1094/MPMI . - https://doi.org/10.1007/s z.. - https://doi.org/10.2135/cropsci1990.. - J10582 of the Miss. - https://doi.org/10.1093/jee . - https://doi.org/10.1093/database/bar022.. - https://doi.org/10.1111/j.1365-313X x.. - https://doi.org/10.1007/. - https://doi.org/10.7717/peerj.2620.. - https://doi.org/1 0.1111/j.1365-313X x.. - org/10.1111/j x.. - org/10.1038/nature08854.. - doi.org/10.1105/tpc . - https://doi.org/10.1016/j.cell . - https://doi.org/10.11 01/gr.849004.. - https://doi.org/1 0.1104/pp . - https://doi.org/10.1105/tpc.021345.. - https://doi.org/10.1534/genetics.166.2.935.. - https://doi.org/10.1073/pna s . - https://doi.org/10.1093/nar/gks1104.. - https://doi.org/10.1038/nature07723.. - https://doi.org/10.3 732/ajb.1400119.. - https://doi.org/10.1101/gr.5396706.. - doi.org a0.. - https://doi.org/10.1101/gr.270902.. - org/10.1104/pp . - org/10.1093/gbe/evs009.. - https://doi.org/10.1371/journal.pgen.0030123.. - https://doi.org/10.1126/. - https://doi.org/10.1126/science.290.. - https://doi.org/10.1111/j x.. - https://doi.org/10.1146/annurev.genet . - https://doi.org/10.1093/pcp/pcs145.. - https://doi.org/10.1105/tpc.10.. - https://doi.org/10.1186/. - https://doi.org/10.1104/pp.16.01725.. - https://doi.org/10.1093/jxb/erv487.. - https://doi.org/10.1111/nph.12971.. - org/10.1371/journal.pone.0086182.. - https://doi.org/10.1105/tpc.111.. - https://doi.org/10.1093/jxb/. - https://doi.org/10.1016/S . - https://doi.org/10.1016/j.. - https://doi.org/10.1093/nar/gkt1223.. - Nucleic Acids Res 2014, 42(Database issue):D1193 – D1199, DOI: https://doi.org/10.1093/. - org/10.1093/nar/gkl976.. - https://doi.org/10.1002/a rch.20034.. - https://doi.org/10.1073/pnas . - https://doi.org . - https://doi.org/10.1093/molbev/mst197.. - org/10.1111/j.1365-313X x.. - https://doi.org/10.1093/molbev/
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