« Home « Kết quả tìm kiếm

Population genomics of Vibrionaceae isolated from an endangered oasis reveals local adaptation after an environmental perturbation


Tóm tắt Xem thử

- some of the genes associated with these SNPs were related to sodium transport..
- BMC Genomics https://doi.org/10.1186/s y.
- com- pared to the Redfield standard N:P 16:1 values of the sea [36.
- The rest of the clades dis- played closed pan-genome patterns (i.e., alpha values >.
- 2 Core gene phylogeny of the 1254 orthologs.
- In the case of the generalist Clade II, we found sub- structure.
- Regarding the posterior distribution of the effective population size, it was far smaller in the Sub-clades (Sub-clade A N e = 55,938.
- Of these ortholog gene families, 297 belonged to the flexible genome, while 70 are part of the core genome.
- Heatmap of the frequency of recombination events among different strains.
- within this category, most of the genes annotated were related to cadherin domains..
- 4), finding most of the clusters previously observed with the core genome phylogeny (Fig.
- First column shows the names of the CCB Clades and reference strains used for the calculus.
- One of the functional enriched GO terms within these genes was the GO:.
- 4 UPGMA of the 598 SNPs associated with the isolation environment.
- Of the total ortholog families in the Vibrio spp.
- Supplementary information accompanies this paper at https://doi.org/10..
- General information of the 42.
- UPGMA and membership of the CCB strains..
- DS- G provided computing facilities and contributed substantially to the analysis and discussion of the data.
- LEE made contributions for the design, analysis, discussion of the data and writing.
- https://doi.org/10.1186/.
- https://doi.org/10.1128/msphere.00326-16..
- Evolutionary roots and diversification of the genus Aeromonas.
- https://doi..
- org/10.3389/fmicb .
- Estimating the size of the bacterial pan-genome..
- https://doi.org/10.1016/j.tig .
- https://doi.org/10.1093/molbev/mss163..
- https://doi.org/10.1128/jb.02285-12..
- https://doi.org/10.3389/fmicb..
- doi.org/10.1016/j.ympev .
- https://doi.org/10.1371/journal.pone.0006978..
- https://doi.org/10.1038/nmicrobiol.2017.40..
- https://doi.org/10.1093/gbe/evp016..
- https://doi.org/10..
- https://doi.org/10.1073/pnas .
- https://doi.org/10.1038/.
- doi.org/10.1073/pnas .
- Molecular archaeology of the Escherichia coli genome.
- https://doi.org/10.1073/pnas..
- https://doi.org/10.1128/jb.01382-07..
- https://doi.org/10.3389/.
- https://doi.org/10.1534/.
- https://doi.org/10.1038/sj.hdy.6801059..
- https://doi.org .
- https://doi.org/10.7554/elife.38278..
- https://doi.org/10.1111/j x..
- https://doi.org/10.1111/j.1462-2920..
- https://doi.org/10.7717/.
- https://doi.org/10.1038/nrmicro1917..
- https://doi.org/10.1089/ast.2011.0768..
- https://doi.org/10.1038/ismej..
- https://doi.org/10.1093/.
- https://doi.org/10.1089/ast.2011.0694..
- https://doi.org/10.1126/science..
- https://doi.org/10.1186/s .
- doi.org/10.1128/jb.01512-10..
- https://doi.org/10.1128/iai.05138-11..
- https://doi.org/10.3389/fmicb .
- https://doi.org/.
- 10.1016/j.mib .
- https://doi.org/10.1093/bioinformatics/btr124..
- https://doi.org/10.1371/journal.pgen.1003905..
- https://doi.org/10.1093/gbe/evr063..
- doi.org/10.1371/journal.pcbi.1004041..
- https://doi.org/10.1093/bioinformatics/.
- doi.org/10.1128/aem.02377-17..
- https://doi.org/10.1128/jb..
- https://doi.org/10.1128/jb.01808-07..
- https://doi.org/10.1111/j..
- https://doi.org/10.1093/gbe/evs027..
- https://doi.org/10.1128/jb .
- https://doi.org/10.1130/ges00849.1..
- https://doi.org x(77)90128-x..
- org/10.1016/s .
- org/10.1093/nar .
- https://doi.org/10.1093/bioinformatics/btm404..
- https://doi.org/10.1128/aem..
- https://doi.org/10.1128/aem.00062-07..
- https://doi.org/10.1093/nar/gkn879..
- doi.org/10.1093/sysbio/syq010..
- org/10.1038/nmeth.2109..
- org/10.1093/bioinformatics/btq683..
- https://doi.org/10.1093/bioinformatics/btu153..
- https://doi.org/10.1093/bioinformatics/btu031..
- https://www.R-project.org/..
- https://doi.org/10.1093/nar/gkn1006..
- https://doi.org/10.1371/.
- https://doi.org/10.1093/oxfordjournals.molbev.a040567..
- https://doi.org/10.1093/bioinformatics/btl474..
- https://doi.org/10.1093/nar/gku1196..
- https://doi.org/10.1371/journal.pone.0011147..
- 10.1093/bioinformatics/btu033..
- https://doi.org/10.1093/molbev/mst030..
- https://doi.org/10.1111/mpp.12688..
- org/10.1111/j.2041-210x x..
- https://doi.org/10.1099/mgen.0.000056..
- https://doi.org/10.7717/peerj.281..
- https://doi.org/10.1086/.
- https://doi.org/10.1038/nrg2796.

Xem thử không khả dụng, vui lòng xem tại trang nguồn
hoặc xem Tóm tắt