- Chemistry Add-in for Word User’s Guide. - This document describes how to use the Chemistry Add-in for Word, a Microsoft Word add-in that provides a simple and flexible way to include chemical information in a Word document.. - Most resources discussed in this paper are provided with the Chemistry Add-in package. - The Chemistry Add-in provides a simple and flexible way to include chemical information in a Word document.. - With the Chemistry Add-in, you can:. - The Chemistry Add-in also includes an editor that enables you to modify the structure. - The diagram is inserted into the document as a PNG image, so that others can view it, whether or not they have installed the Chemistry Add-in on their system. - You can also publish a document authored using the Chemistry Add-in as a PDF file.. - “water”, and then use the Chemistry Add-in to convert it to your preferred representation.. - The Chemistry Add-in can handle any molecule that has appropriate CML data. - The Chemistry Add-in includes CML data for several hundred. - The Chemistry Add-in supports publishing and data-mining scenarios for authors, readers, publishers, and other vendors across the chemical information community.. - This paper describes how to use the Chemistry Add-in to include chemical information in a Word document.. - This section describes how to get started with the Chemistry Add-in.. - The Chemistry Add-in is packaged in a file named. - To Install the Chemistry Add-in. - Copy the Chemistry Add-in .zip file to your hard drive.. - Use the installation wizard to install the Chemistry Add-in.. - Tip: The rest of the document will be easier to follow if you first install the Chemistry Add-in.. - The Chemistry tab contains the primary user interface for the Chemistry Add- in, as shown in Figure 2.. - Save Selection saves a chemistry zone to the Chemistry Gallery.. - Chemistry Navigator displays a panel that contains all the chemistry zones in the current document.. - Manage the chemistry-related aspects of the document:. - Options enables you to configure the Chemistry Add-in.. - molecule’s CML data. - This section shows how to use the commands from the Chemistry group to create and manage chemistry zones.. - Select the word or phrase that you want to include in the zone and right- click it.. - Unlike Math equation zones, the chemistry zone UI does not display a dropdown menu. - Each chemistry zone is based on CML data that is included in the document.. - Specify a Chemistry Zone’s Representation. - The benzene CML data contains two labels—the IUPAC name (benzene) and a trivial name (phenyl hydride)—the concise formula, and a set of 2-D data.. - To change a chemistry zone’s representation. - Click the Chemistry group’s View command, which displays the Manage View Options dialog box.. - Change a Zone’s Labels. - To modify a zone’s labels. - The Chemistry Add-in enables you to add or remove labels (if they are not being used in the document), or modify their properties.. - Type the new label’s name in the empty box.. - Click OK to add the new label to the zone’s CML.. - The changes apply only to the selected zone’s CML data—which is stored in the document—and to any linked zones. - If you use the procedure in the preceding section to create a new water zone, it will have a default set of labels. - Insert a Zone from the Chemistry Gallery. - An alternative way to add chemistry zones to a document is the Chemistry Gallery, which contains a collection of zones that can be inserted directly into a document.. - Figure 7 shows the first few items in the Chemistry Gallery that is included with the Chemistry Add-in package.. - To insert a chemistry zone into a document from the Chemistry Gallery. - Place the cursor at the appropriate place in the document.. - Change the zone’s representation to the appropriate representation.. - Manage the Zones in the Chemistry Gallery. - You can customize the Chemistry Gallery for your particular project or group by adding new zones in either of two ways:. - Import a CML file, to add zones that are not already included with the Chemistry Add-in.. - Each item in the Chemistry Gallery represents a particular chemical zone, not necessarily a unique molecule. - Open the Chemistry Gallery and right click a zone to display the Chemistry Gallery popup.. - The Chemistry Gallery zones are in the Custom 5 gallery.. - How to Manage Chemistry Zones with the Chemistry Navigator. - The Chemistry Navigator helps you manage a document’s chemistry zones.. - To open the manager, click the Chemistry Navigator command, which opens the Chemistry Navigator panel on the right side of the document.. - The Chemistry Navigator panel shows every chemistry zone in the document in document order: left to right, top to bottom, as shown in Figure 8.. - The items are represented in the panel by the preferred navigator depiction, followed by the 2-D representation where possible.. - If, for example, you change a particular linked zone’s representation or modify its 2-D structure, you also change every other zone in the collection.. - You can use Chemistry Navigator to insert linked or unlinked zones by using the buttons to the right of the appropriate concise formula, as shown in the second instance of C6H6 in Figure 8.. - The new zone appears in the Chemistry Navigator in the appropriate document position.. - Use Manage View Options to specify the preferred representation in the document.. - When you specify the 2-D representation to be used in the document, the Chemistry Add-in uses this data to generate and display a 2-D diagram. - The Chemistry Add-in also enables you to modify a zone’s 2-D representation, typically for one of the following reasons:. - To edit a zone’s 2-D structure. - The 2-D editor is only available as an option when the zone depicted in the document has an associated 2D structure.. - The window is modal, so you must close it before doing any further work in the document.. - Edit the diagram, as described in the following sections.. - When you click OK to close the editor, the zone’s CML data is updated and the new diagram is displayed in the zone, as well as in any linked zones.. - The diagram shown in the document is a PNG image, which is generated from the CML data and inserted into the document. - Others can thus read documents authored using the Chemistry Add-in, even with earlier versions of Word such as Word 2003. - If you view a chemistry document with a version of Word that lacks the Chemistry Add-in, Word simply displays the image and ignores the embedded CML data.. - The Controls of the 2-D Editor. - Click and hold the left button and drag the cursor so that the rectangle includes the atoms that belong in the group.. - The atoms in the group are indicated by closed blue circles, as shown in Figure 11.. - Move the cursor in the direction which you wish the selection to be.. - Tip: It is sometimes convenient to move the molecule to a different location in the editor. - This command changes the atom assigned to the selected location in the diagram. - The first part of the list shows individual atom substitutions and the second a selected set of groups that can replace oxygen in the current chemical. - Right-click anywhere in the diagram and select Bond Mode.. - Select a bond in the diagram and the bond popup is displayed.. - Moving atoms or groups, as shown in the previous section, simply translates the atoms. - This section provides links to additional information about the Chemistry Add- in.. - The Chemistry Add-in uses a subset of CML, CMLLite, which includes support for:. - The data is typical for the Chemistry Add-in molecules, and includes:. - CML Data Storage. - The Chemistry Add-in stores CML data in the following ways. - The Chemistry Add-in Smart Tag folder contains CML data for several hundred common molecules.. - To simplify chemistry zone creation, many molecules are represented by smart tags, as discussed in the next section. - The associated data for each molecule is in a .cml file in the add-in’s Smart Tag folder, which is typically c:\Program Files\Chem4Word\Smart Tag.. - The Chemistry Gallery is a Word gallery that contains a collection of chemistry zones.. - The Chemistry Gallery has its own backing data. - a set of .cml files in the add- in’s c:\Program Files\Chem4Word\data folder.. - When a user inserts a chemistry zone into a document, the associated CML data is stored in the document.. - However, these commands affect only the data that is stored in the document.. - document.xml contains the body of the document in Office Open XML. - The Chemistry Add-in identifies the associated XML block as a chemistry zone by setting the alias element's val attribute to “chemistry”.. - The following example shows the chemistry zone XML for benzene:. - The zone’s CML data is stored separately, in the document’s customXml folder.. - The zone’s id element links the zone to the associated CML data file. - The benzene chemistry zone was created with a smart tag, so item8.xml contains the CML-formatted data from benzene’s CML file in the Smart Tag folder, 241.cml.
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