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Caenorhabditis elegans

Tìm thấy 20+ kết quả cho từ khóa "Caenorhabditis elegans"

Biological model: Caenorhabditis elegans

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The Caenorhabditis elegans genome: A guide in the post genomics age. Together or alone? Foraging strategies in Caenorhabditis elegans. sensitivity in Caenorhabditis elegans.. The mysterious case of the C. A transparent window into biology: A primer on Caenorhabditis elegans.. Caenorhabditis elegans: plague bacteria biofilm blocks food intake. RNA Interference in Caenorhabditis elegans. Caenorhabditis elegans: modern biological analysis of an organism.

The symbiotic relationship between Caenorhabditis elegans and members of its microbiome contributes to worm fitness and lifespan extension

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The native microbiome of the nematode Caenorhabditis elegans: gateway to a new host-microbiome model. https://doi.org/10.11 86/s . doi.org/10.1016/j.arr . The Caenorhabditis elegans proteome response to naturally associated microbiome members of the genus Ochrobactrum.

Transcriptomic insights into the effects of CytCo, a novel nematotoxic protein, on the pine wood nematode Bursaphelenchus xylophilus

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The Caenorhabditis elegans CUB-like- domain containing protein RBT-1 functions as a receptor for Bacillus thuringiensis Cry6Aa toxin. Quantitative proteome analysis of Caenorhabditis elegans upon exposure to nematicidal Bacillus thuringiensis. Programmed Necrosis in the Cross Talk of Cell Death and Inflammation. Jak-STAT signaling pathways in cells of the immune system. Multiple functions of the noncanonical Wnt pathway. KEGG: Kyoto Encyclopedia of Genes and Genomes.

Phylogenetic analysis of the ATP-binding cassette proteins suggests a new ABC protein subfamily J in Aedes aegypti (Diptera: Culicidae)

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Although MutS, SMC, and Rad50 proteins show ABC protein characteristics, they have not yet been included in the standard ABC classification for humans, arthropods, and the Caenorhabditis elegans nematode . Nonetheless, in the complete inventory of ABC proteins of the Arabidopsis thaliana plant, SMC proteins were pro- posed as a new ABC protein subfamily [17]..

Alternative splicing is highly variable among Daphnia pulex lineages in response to acute copper exposure

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Global analyses in eukaryotes have re- ported a large variation in the prevalence of alternative splicing among taxa [9–11], from about 25% of genes in Caenorhabditis elegans [12] and 31% of genes in Dros- ophila [13], to over 90% of genes in humans [14]. Gen- omic architecture has been suggested to play a role in the diversity of observed frequencies of different types of alternative splicing [15].

Adaptation of pine wood nematode Bursaphelenchus xylophilus to β-pinene stress

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Intestinal transcriptomes of nematodes: comparison of the parasites Ascaris suum and Haemonchus contortus with the free-living Caenorhabditis elegans. De novo sequencing and comparative analysis of the blueberry transcriptome to discover putative genes related to antioxidants

ManiNetCluster: A novel manifold learning approach to reveal the functional links between gene networks

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To investi- gate this discrepancy, we applied ManiNetCluster to the time-series gene expression datasets of model organ- isms, Caenorhabditis elegans (worm) and Drosophila melanogaster (fly), taken during embryogenesis, to deter- mine whether orthologous genes have non-linear relation- ships, and if these relationships are also conserved across species.

Comparative genomics of the coconut crab and other decapod crustaceans: Exploring the molecular basis of terrestrial adaptation

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The coconut crab also shows prolifera- tion of genes involved in the visual, respiratory, olfactory and cytoskeletal systems. molecular function for each of the significantly prolifer- ated genes that had data available in Flybase or Entrez (under Drosophila melanogaster, Homo sapiens, Danio rerio or Caenorhabditis elegans).. Of the three genomes that were assembled in this study, the genome of the coconut crab, Birgus latro, was the most interesting in terms of informativeness.

Intron and gene size expansion during nervous system evolution

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On the formation of novel genes by duplication in the Caenorhabditis elegans genome. Sequence, structural and expression divergence of duplicate genes in the bovine genome. The evolution of gene expression levels in mammalian organs. Evolutionary dynamics of gene and isoform regulation in mammalian tissues. Massively parallel sequencing of the polyadenylated transcriptome of C.

The role of nitric oxide during embryonic wound healing

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Epidermal wound healing in the nematode Caenorhabditis elegans. Adult zebrafish as a model system for cutaneous wound-healing research. Fast calcium wave inhibits excessive apoptosis during epithelial wound healing. Calcium and wound healing in Xenopus early embryos.. The presence of oxygen in wound healing.. Mitochondrial ROS regulates cytoskeletal and mitochondrial remodeling to tune cell and tissue dynamics in a model for wound healing. Nitric oxide regulates wound healing.

Diverse biological processes coordinate the transcriptional response to nutritional changes in a Drosophila melanogaster multiparent population

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Life extension via dietary restriction is independent of the Ins/IGF-1 signaling pathway in Caenorhabditis elegans. High- resolution dynamics of the transcriptional response to nutrition in Drosophila: a key role for dFOXO. Environmental and evolutionary drivers of the modular gene regulatory network underlying phenotypic plasticity for stress resistance in the Nematode Caenorhabditis remanei

The tapeworm interactome: Inferring confidence scored protein-protein interactions from the proteome of Hymenolepis microstoma

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Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Divergent Axin and GSK-3 paralogs in the beta-catenin destruction complexes of tapeworms.

A genome-wide screening for RNAi pathway proteins in Acari

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Table 2 Catalytic residues of Argonautes of the Ago, Piwi and Wago groups in Acari species, Caenorhabditis elegans, Drosophila melanogaster and Tribolium castaneum. The amino acid sequences of the PIWI domains were aligned with MAFF T [42]. Substitutions of the Histidine to Aspartate (D) or Lysine (K) are colored in light blue. Duplicates of this protein were found in the genomes of all studied species. However, three out of the total four proteins identified in I.

Transcriptome analysis uncovers the key pathways and candidate genes related to the treatment of Echinococcus granulosus protoscoleces with the repurposed drug pyronaridine

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Increased expression of ABC transport proteins is associated with ivermectin resistance in the model nematode Caenorhabditis elegans. Expression of ATP-binding cassette multidrug transporters in the giant liver fluke Fasciola gigantica and their possible involvement in the transport of bile salts and anthelmintics. Heat shock protein (HSP) drug discovery and development: Targeting heat shock proteins in disease.

Gene expression patterns of red sea urchins (Mesocentrotus franciscanus) exposed to different combinations of temperature and pCO2 during early development

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The Caenorhabditis elegans cell-death protein CED-3 is a cysteine protease with substrate specificities similar to those of the human CPP32 protease. https://doi.org/10.1007/s . https://doi.org/10.3354/meps11973..

Consistent ultra-long DNA sequencing with automated slow pipetting

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MinION-based long-read sequencing and assembly extends the Caenorhabditis elegans reference genome. Ultra-long read sequencing for whole genomic DNA analysis. Generating ultra long reads on Oxford Nanopore MinION/. Ultra-long read sequencing protocol for RAD004 V.3. Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly

Ion channel profiling of the Lymnaea stagnalis ganglia via transcriptome analysis

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To this end, we analyzed publicly deposited RNA-seq librar- ies to characterize gene expression in the CNS of adult Mus musculus (mouse) [53], Xenopus tropicalis [53], Da- nio rerio (zebrafish) [54], Drosophila melanogaster (fruit fly) (BioProject: PRJNA320764), and Caenorhabditis elegans [55] (Table S1). An- notation of the top 20 expressed transcripts in each of these five species (Tables S7, S8, S9, S10 and S11), in the same manner as done for L.

Comparative transcriptome analysis of three gonadal development stages reveals potential genes involved in gametogenesis of the fluted giant clam (Tridacna squamosa)

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Gonad morphogenesis and distal tip cell migration in the Caenorhabditis elegans hermaphrodite. Dietary intake of 17alpha-ethinylestradiol promotes leukocytes infiltration in the gonad of the hermaphrodite gilthead seabream. Genomic Analysis of the Pacific Oyster (<. Insights into shell deposition in the Antarctic bivalve Laternula elliptica: gene discovery in the mantle transcriptome using 454 pyrosequencing.

Extensive gene rearrangements in the mitogenomes of congeneric annelid species and insights on the evolutionary history of the genus Ophryotrocha

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Evidence for the frequent use of TTG as the translation initiation codon of mitochondrial protein genes in the nematodes, Ascaris suum and Caenorhabditis elegans. Phylogenetic information from three mitochondrial genomes of Terebelliformia (Annelida) worms and duplication of the methionine tRNA. The complete mitochondrial genome of the marine polychaete: Hediste diadroma (Phyllodocida, Nereididae). Mitochondrial genomes to the rescue – Diurodrilidae in the myzostomid trap.

Whole-genome sequencing of Puccinia striiformis f. sp. tritici mutant isolates identifies avirulence gene candidates

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Of the single nucleotide polymorphisms (SNPs) caused by EMS, C/G to T/A transitions were most frequent in various organisms, including Arabidop- sis thaliana [11, 12], Caenorhabditis elegans [13, 14], Lotus japonicus [15], Oryza sativa [12, 16] and Saccharo- myces cerevisiae [17]. Identifying and cloning avirulence genes are based on the gene-for-gene hypothesis proposed by Flor [22], which states that host R genes confer resistance to the cognate Avr genes in the pathogen.