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Eukaryotic genes

Tìm thấy 11+ kết quả cho từ khóa "Eukaryotic genes"

Genome-wide identification, characterization, and evolutionary analysis of flowering genes in radish (Raphanus sativus L.)

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We compared the retention of genes from each of the above-mentioned four gene sets and three other gene sets: all A. thaliana genes, 2780 genes flanking the flowering genes (10 on either side), and 459 core eukaryotic genes.

Prediction of pathogenicity genes involved in adaptation to a lupin host in the fungal pathogens Botrytis cinerea and Sclerotinia sclerotiorum via comparative genomics

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CEGMA [20] analysis showed a high percentage of highly conserved core eukaryotic genes were present in all three draft assemblies with 95.97% in Sscl-Lang, 97.18% in Sscl-Lmut and 96.37%. in Bcin-Lang. Proteins from these genomes were function- ally annotated with gene ontology (GO) terms assigned to and of predicted proteins of Sscl-Lang and Sscl-Lmut respectively and Pfam domains assigned to and genes in Sscl-Lang and Sscl-Lmut respectively.

Comparative genome and transcriptome analysis of diatom, Skeletonema costatum, reveals evolution of genes for harmful algal bloom

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Diatom common genes were preserved about 45% from the number of STPV and STP genes that may have the essential role in the functionality of the harmful algal bloom. BUSCO analysis represents conservation rate of the common eukaryotic genes for four different assemblies. Color key is described in the figure (b). Enrichment analysis for the common genes for the harmful algal bloom and Sc-specific genes, Sc-duplicated genes.

Host plant adaptation in the polyphagous whitefly, Trialeurodes vaporariorum, is associated with transcriptional plasticity and altered sensitivity to insecticides

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Furthermore, 94% of CEGMA core Eukaryotic genes (including both complete and partial genes) were present in the assembled genome (Additional file 6:. Approximately 30% of the rapidly evolving genes gained in T. Curation and phylogeny of genes involved in detoxification of natural and synthetic xenobiotics Because of our interests in the mechanisms underpinning adaptation of T. A total of 80 cytochrome P450s were identified in the T. Phylogenetic comparison of the CYPome of T.

In vitro resynthesis of lichenization reveals the genetic background of symbiosisspecific fungal-algal interaction in Usnea hakonensis

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Approximately 99% of the reads used in the assembly was mapped back to 879 fungal and 677 algal scaffolds larger than 2 kb that contain all identified core eukaryotic genes.

New insights into the phylogenetics and population structure of the prairie falcon (Falco mexicanus)

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The assembly size (1.17 Gb) and the number of genes annotated (>. 16,000) are very similar to that of the F. The overall completeness of the genome is further indicated by the number of core eukaryotic genes identified (89. a Results of STRUCTURE analysis for 54 known-provenance chicks sampled from California ’ s San Francisco East Bay Area, Pinnacles National Park and the Mojave Desert that were genotyped at 123 SNP loci.

Loss of stomach, loss of appetite? Sequencing of the ballan wrasse (Labrus bergylta) genome and intestinal transcriptomic profiling illuminate the evolution of loss of stomach function in fish

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Moreover, the completeness of the ballan wrasse genome, measured as number of conserved eukaryotic genes using tools that estimate gene set completeness, CEGMA and BUSCO, was, for instance, comparable to the newest version of the Atlantic cod genome [12, 13].. In total, 26,618 genes (44%) of the transcripts were annotated with BLASTx (p. Of these, 7730 cover more than 90% of the best Uniprot hit protein length, indicating full-length sequences (Additional file 2)..

Comparative genome analyses reveal sequence features reflecting distinct modes of host-adaptation between dicot and monocot powdery mildew

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To evaluate the quality and completeness of the assem- bly, we conducted CEGMA (core eukaryotic genes map- ping approach) analysis [35]. The CEGMA results show that only one of the 248 core eukaryotic genes (CEGs), i.e. Another CEG, KOG0894 encoding an ubiquitin-conjugating enzyme E2, is partially deleted in all of the four genomes. Des- pite much effort, only of the four genomic sequences could be assembled into scaffolds (Table 2)..

Transcriptomic profiles of Dunaliella salina in response to hypersaline stress

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Compared with the predicted numbers of gene loci of the two green algae, 9256 is a rather high number, since many genes aren’t expressed and their mRNAs can’t be detected. Furthermore, approximately 87.1% of the core eukaryotic genes (CEGs) were iden- tified from the 9256 individual genes by sequence similarity search which suggests a rather high cover- age of the Dunaliella salina transcriptome..

Gene regulatory response to hyposalinity in the brown seaweed Fucus vesiculosus

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We found that in the Parainen population28.0% of non-DE genes contained fixed sites, with on average fixed SNPs (mean ± C. Among DE genes from Parainen sample genes Table 3 Genes involved in the oxidative stress response that. Thus, the proportion of genes with the fixed differences in the two populations were higher in DE genes than in non-DE genes, while the average number of fixed sites per gene seems to be similar in DE and non-DE genes.. contains 89% of the conserved eukaryotic genes.

Whole genome and transcriptome analysis reveal adaptive strategies and pathogenesis of Calonectria pseudoreteaudii to Eucalyptus

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CEGMA analysis indi- cated that 240 out of core eukaryotic genes were identified in the C. Among these proteins were similar to the sequences in NCBI were mapped to the KEGG database were classified in the NOG database (Additional file 2: Figure S1), and were assigned to GO terms (Additional file 2: Figure S2).. Phylogeny and analysis of gene families. We have identified 14,500 gene families in 14 organisms. More common gene families (169) shared by C.

The eukaryotic MEP-pathway genes are evolutionarily conserved and originated from Chlaymidia and cyanobacteria

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The eukaryotic MEP-pathway genes are evolutionarily conserved and originated from Chlaymidia and cyanobacteria. The MEP-pathway is present in all plastid-bearing organisms and most eubacteria. However, no comprehensive study reveals the origination and evolutionary characteristics of MEP-pathway genes in eukaryotes..

A benchmark study of ab initio gene prediction methods in diverse eukaryotic organisms

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Possible role of flanking nucleotides in recognition of the AUG initiator codon by eukaryotic ribosomes

Complete genomes of the eukaryotic poultry parasite Histomonas meleagridis: Linking sequence analysis with virulence / attenuation

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To evaluate the accuracy of the assemblies we employed three metrics: i) base-level accuracy, ii) presence of eukaryotic core genes and iii) completeness of gene models. Last, we evaluated the completeness of gene models by classifying the CDS into complete (having stop and start codon) or partial (hav- ing only stop or only start) and found that 100% of the genes have complete CDS in both strains, underlining the high quality of the assemblies.

Diatom flagellar genes and their expression during sexual reproduction in Leptocylindrus danicus

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To address func- tional differences between the two species, we cultivated them and sequenced their transcriptomes taking advan- tage of the Marine Microbial Eukaryotic Transcriptome Sequencing Project (MMETSP, [25.

Identification of differentially expressed genes and pathways in mice exposed to mixed field neutron/photon radiation

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Examining the list of differentially expressed genes in the EIF2 signaling pathway (Additional file 5) we noticed that several genes coding for eukaryotic initiation factors (eIFs) were mostly downregulated after irradiation. 50% of all differentially regu- lated RP genes in this pathway) were specifically down- regulated in the neutron component exposures, but not x-rays.

Exon and intron sharing in opposite direction-an undocumented phenomenon in human genome-between Pou5f1 and Tcf19 genes

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Further, in other domains of life, overlapping genes range from short transla- tional couplings of 1-bp overlaps to completely em- bedded ORFs [2, 6].. The reason for the presence of overlapping genes in the eukaryotic nuclear genome is not clear. As higher eukaryotic genome such as human genome is spacious, occurrence of overlapping genes does not seem to be re- lated to minimizing genome size due to evolutionary pressure.

Identification of a novel fused gene family implicates convergent evolution in eukaryotic calcium signaling

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SnRK3s from eukaryotic supergroups Excavata, Arachaeplastida, and SAR had the NAF motif, a signature domain of SnRK3 in the C-terminal follow- ing the kinase domain, for interaction with the CBL pro- tein [26] (Fig. However, no exact NAF motif was found in the X monophyletic members.. Origin of the X monophyly genes in the ancestor of Metakinetoplastina protists.

Transcriptome profiling of Stevia rebaudiana MS007 revealed genes involved in flower development

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Hence, this study aims to identify the genes involved in the flowering of local S.. These genes involved in various metabolic pathways related to flower development, response to stimulus as well as photosynthesis. Pheophorbide A oxygenase (PAO), eukaryotic translation initiation factor 3 subunit E (TIF3E1), and jasmonate ZIM domain-containing protein 1 (JAZ1) were found to be involved in the flower development.

Genome analyses provide insights into the evolution and adaptation of the eukaryotic Picophytoplankton Mychonastes homosphaera

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Genome analyses provide insights into the evolution and adaptation of the eukaryotic Picophytoplankton Mychonastes. Result: The 24.23 Mbp nuclear genome of M.homosphaera, harboring 6649 protein-coding genes, is more compact than the genomes of the closely related Sphaeropleales species. The genome sequence of M.homosphaera reveals the strategies adopted by this organism for environmental adaptation in the eutrophic lake.