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Functional genomics

Tìm thấy 12+ kết quả cho từ khóa "Functional genomics"

Comparative and functional genomics of the ABC transporter superfamily across arthropods

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Comparative and functional genomics of the ABC transporter superfamily across arthropods. Using Kruskal-Wallis tests and the Computational Analysis of gene Family Evolution (CAFE), we were able to observe significant expansions of the ABC-B full transporters (P-glycoproteins) in Lepidoptera and the ABC-H transporters in Hemiptera. Conclusions: We have performed an annotation of the ABC superfamily across >.

FishDB: An integrated functional genomics database for fishes

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We have built the Fish Genome Database (FishDB), which provides a central portal for genomics, tran- scriptomics, genetics, and evolutionary biology of fish.. FishDB stores various sequences, including genomes, transcriptomes, mitochondrial genomes, ESTs, ortho- logs, noncoding RNAs, UTRs, and CDSs of fish species..

Integrative genomics of the mammalian alveolar macrophage response to intracellular mycobacteria

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The source code used to integrate the outputs from functional genomics and GWAS data sets is available from a GitHub repository (https://github.com/ThomasHall1688/gwinteR) Detailed RNA-seq filtering and mapping statistics are provided in a data file available from the Dryad Digital Repository: https://doi.org/10.5061/dryad.83bk3j9q6.. https://doi.org/10.1016/j.vaccine . https://doi.org . https://doi.org/10.33 89/fvets . https://doi.org/10.1111/. https://doi.org/10.1073/pnas . https://doi.org/10.1111

Chuong 2-Phan Tiep Theo-K22

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H ệ gen h ọ c (genomics)- H ệ gen h ọ c c ấ u trúc (Structural genomics)- H ệ gen h ọ c ch ứ c n ă ng (Functional genomics)- H ệ gen h ọ c so sánh (Comperative genomics) Y Ế U T Ố DI TRUY Ề N CHUY Ể N V Ị - Là nh ữ ng ADN l ặ p l ạ i n ằ m r ả i rác trong h ệ gen, có kh ả n ă ng di chuy ể n sang các vùng khác nhau trong h ệ gen (cód ạ ng t ự di chuy ể n đượ c, có d ạ ng không t ự di chuy ể n đượ cmà c ầ n thêm y ế u t ố b ổ tr ợ.

JCDB: A comprehensive knowledge base for Jatropha curcas, an emerging model for woody energy plants

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Although each of these resources provides valuable information, there is a lack of database unification and integration of the J.. curcas genome and transcriptome with a broad set of multi-omics analysis results, such as gene functional an- notation, gene expression matrices, and gene interaction networks.. curcas functional genomics research.

Comparative transcriptome analysis of root, stem, and leaf tissues of Entada phaseoloides reveals potential genes involved in triterpenoid saponin biosynthesis

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Conclusions: The dataset reported here will facilitate the research about the functional genomics of triterpenoid saponin biosynthesis and genetic engineering of Entada phaseoloides.. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material.

Genome sequence of the model rice variety KitaakeX

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The high-quality genome of the model rice plant KitaakeX will accelerate rice functional genomics.. Conclusions: The high quality, de novo assembly of the KitaakeX genome will serve as a useful reference genome for rice and will accelerate functional genomics studies of rice and other species..

Sujea2pmgctrinh Tu Genome

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T ừ “genomics” đến “functional genomics” D ự án quốc tế về đọc tr ình t ự bộ gen cây lúa được phát động từ tháng Hai 1998, v ới k ế hoạch s ẽ ho àn t ất trong 10 năm ( Wang và Leung 1999). Th ực tế, g enome cây lúa có kho ảng 170 Mb của tổng số 430 Mb đ ã được ho àn thi ện trong 5 năm đầu ti ên. Tháng Giêng 2001, t ập đo àn Syngenta công b ố việc hoàn thành đọc chuỗi ký tự genome cây lúa, v ới khoảng 50.000 gen. Trung bình m ỗi gen có khoảng 3 .000 bp.

Chuong 2-phan I

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H ệ gen h ọ c(genomics)-H ệ gen h ọ cc ấ utrúc(Structural genomics)-H ệ gen h ọ cch ứ cn ă ng(Functional genomics)-H ệ gen h ọ cso sánh(Comperativegenomics) H Ệ GEN (GENOME) H ệ gen (genome) làgì?Hen cóh ả ilàtht ấ tc ả cácen?Tínhph ứ ct ạ pc ủ ah ệ gen cóph ả nánhm ứ c độ ti ế nhóa. H ệ gen bao g ồ m nh ữ ng vùng ch ứ a gene l ẫ n nh ư ng đ o ạ n không phiên mã. Đ as, h ệ gen vi khunphânbtrênm ộ tNST d ạ ngvòngkhépkínvàcókíchth ướ cnh ỏ.

High-density linkage map construction and QTL analyses for fiber quality, yield and morphological traits using CottonSNP63K array in upland cotton (Gossypium hirsutum L.)

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BLAST searching of the 22 genomic regions harboring stable QTLs in the Cotton Functional Genomics Data- base (https://cottonfgd.org/) identified 33 known genes. The limited quantity of the polymorphic markers avail- able were often limitations for the construction of high-.

Comparative analysis of Lactobacillus gasseri from Chinese subjects reveals a new species-level taxa

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Comparative genomics of the lactic acid bacteria. Comparative and functional genomics of the Lactococcus lactis taxon. Comparative genomics of the Bifidobacterium breve taxon.. Identification of phenotypically and genotypically related Lactobacillus strains based on nucleotide sequence analysis of the groEL, rpoB, rplB, and 16S rRNA genes. Evaluation of genetic diversity among strains of the human gut commensal Bifidobacterium adolescentis

GIỚI THIỆU VỀ TIN SINH HỌC

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Gene học chức năng (functional genomics) có thể được định nghĩa nôm na như việc dùng tri thức tiêu biểu về hệ gene để tìm hiểu về genes, về các chức năng sản xuất và sự tương tác của chúng, và quan trọng hơn là vì sao điều này làm cho các sinh vật hoạt động.. Functional genomics Gene học chức năng. Một câu hỏi quan trọng và lý thú khác trong sinh học là sự thể hi ệ n gene đư ợ c “b ậ t” và “t ắ t” th ế nào, t ứ c là các genes đư ợ c điều chỉnh thế nào..

High conservation combined with high plasticity: Genomics and evolution of Borrelia bavariensis

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Functional Genomics ” and “ Infrastructure ” programs of the Research Council of Norway and the Southeastern Regional Health Authorities.. Recurrent evolution of host and vector association in bacteria of the Borrelia burgdorferi sensu lato species complex. Lost in plasmids: next generation sequencing and the complex genome of the tick-borne pathogen Borrelia burgdorferi. Evolution and distribution of the ospC gene, a transferable serotype determinant of Borrelia burgdorferi.

Genomics-assisted prediction of salt and alkali tolerances and functional marker development in apple rootstocks

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The aims of this study were to identify quantitative trait loci (QTLs) and to develop genomics-assisted prediction models for salt, alkali, and salt-alkali tolerance in apple rootstock.. pumila Mill., sensitive) were used to identify 17, 13, and two QTLs for injury indices of salt, alkali, and salt – alkali stress via bulked segregant analysis.

New insights into the evolution and functional divergence of the CIPK gene family in Saccharum

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Thus, these results improve our understanding of the evolution of the CIPK gene family in sugarcane as well as provide a basis for in-depth functional studies of CIPK genes in sugarcane.. Under salt stress, CIPK21 participates in the regulation of response to osmotic stress in A. the evolution and function of the CIPK gene family, we here analyzed comparative genomics analysis with an emphasis on the functional divergence of the CIPK gene family in Saccharum.

Functional examination of lncRNAs in allotetraploid Gossypium hirsutum

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Functional validation of lncRNAs identified in the low- throughput screen. To validate the accuracy of the low-throughput func- tional examination, representative functional lncRNAs were further assessed.

Comparative genomics of eight Lactobacillus buchneri strains isolated from food spoilage

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The small number of unique spacers and conserved repeat sequences in CRISPR 2, along with the differences in amino acid iden- tity between the cas sequences of the two loci seem to indi- cate this locus remained functional post-duplication and has begun diverging from CRISPR 1 over evolutionary time.. Assuming a fully functional CRISPR-Cas system, the expression of self-targeting spacers should result in host eradication, however, a variety of escape mechanisms have been observed [48, 49].

Comparative genomics of whole-cell pertussis vaccine strains from India

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Comparative genomics of whole-cell pertussis vaccine strains from India. Genetic divergence in circulating strains of Bordetella pertussis has been reported as one of the contributing factors for the resurgence of the disease. We report here comparative genome analyses of vaccine and clinical isolates reported from India.

Functional module detection through integration of single-cell RNA sequencing data with protein–protein interaction networks

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A more holistic approach is the comparison of the detected functional modules with disease associations to identify disease modules. We undertake and discuss this approach in Section 6 in the SI.. are also fruitful in the single-cell setting. In conclusion, we demonstrate that integrating scRNA- seq data with PPINs detects distinct enriched biological pathways and demonstrates a functional heterogeneity of cell clusters in the liver.

Comparative genomics reveals broad genetic diversity, extensive recombination and nascent ecological adaptation in Micrococcus luteus

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Population genomics of early events in the ecological differentiation of bacteria