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Genome-wide association analysis

Tìm thấy 11+ kết quả cho từ khóa "Genome-wide association analysis"

Identification of loci and candidate gene GmSPX-RING1 responsible for phosphorus efficiency in soybean via genome-wide association analysis

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Identification of loci and candidate gene GmSPX-RING1 responsible for phosphorus efficiency in soybean via genome-wide association analysis. One SNP AX-93932874 was detected within 5 ′ -untranslated region of Glyma.10 g018800, which contained SPX and RING domains and was named as GmSPX-RING1. Furthermore, the function research of GmSPX-RING1 was carried out in soybean hairy root transformation..

Genome-wide association and genotype by environment interactions for growth traits in U.S. Gelbvieh cattle

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GWAA: Genome-wide association analysis. https://doi.org/10.1071/EA05068.. Utsunomiya YT, do Carmo AS, Carvalheiro R, Neves HH, Matos MC, Zavarez LB, et al. https://doi.. https://doi.org/10.1371/journal.pone.0147180.. doi.org/10.4238/gmr.15027471.. doi.org/10.2527/jas1982.553543x.. doi.org x.. https://doi.org/10.. Spelman RJ, Huisman AE, Singireddy SR, Coppieters RJ, Arranz J, Georges M, et al. https://doi.org/10.3168/.

Exploring genetic resistance to infectious salmon anaemia virus in Atlantic salmon by genome-wide association and RNA sequencing

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A genome-wide association analysis confirmed that resistance to ISAV was a polygenic trait, albeit a genomic region in chromosome Ssa13 was significantly associated with resistance and explained 3% of the genetic variance. RNA sequencing of the heart of 16 infected (7 and 14 days post infection) and 8 control fish highlighted 4927 and 2437 differentially expressed genes at 7 and 14 days post infection respectively.

Combining information from genome-wide association and multi-tissue gene expression studies to elucidate factors underlying genetic variation for residual feed intake in Australian Angus cattle

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Bivariate genome-wide association analysis of the growth and intake components of feed efficiency. Whole genome association studies of residual feed intake and related traits in the pig. Transcriptome analysis reveals that Vitamin A metabolism in the liver affects feed efficiency in pigs. Stanniocalcin-2 inhibits mammalian growth by proteolytic inhibition of the insulin-like growth factor axis.

Genome-wide association analysis reveals genetic variations and candidate genes associated with salt tolerance related traits in Gossypium hirsutum

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Genome-wide association analysis reveals genetic variations and candidate genes associated with salt tolerance related traits in Gossypium hirsutum. It is therefore important to breed salt tolerance varieties which can help accelerate the improvement of cotton production. The development of molecular markers linked to causal genes has provided an effective and efficient approach for improving salt tolerance..

A fast-linear mixed model for genome-wide haplotype association analysis: Application to agronomic traits in maize

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FaST linear mixed models for genome-wide association studies. Genome-wide efficient mixed-model analysis for association studies. Genome-wide barebones regression scan for mixed-model association analysis. Genome Wide Association Studies Using a New Nonparametric Model Reveal the Genetic Architecture of 17 Agronomic Traits in an Enlarged Maize Association Panel. Statistical properties of the number of recombination events in the history of a sample of DNA sequences..

Genome-wide association study reveals novel loci associated with feeding behavior in Pekin ducks

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In this study, we carried out a genome-wide association study for feeding behavior in Pekin ducks based on GBS method to identify novel loci associated with these traits.. The feeding behavior information was collected from 540 ducks. feeding behavior traits were moderate (ranging from 0.17 to 0.32), with MD having the highest genomic herit- ability (0.32) among all the traits. Association analysis for feeding behavior traits.

Genome-wide association study (GWAS) reveals genetic loci of lead (Pb) tolerance during seedling establishment in rapeseed (Brassica napus L.)

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Genome-wide association analysis of lead accumulation in maize. Genome-wide. Genome-Wide Association Study of Cadmium Accumulation at the Seedling Stage in Rapeseed (Brassica napus L. Genome- Wide Association Study Reveals the Genetic Architecture Underlying Salt Tolerance-Related Traits in Rapeseed (Brassica napus L. Identification of a gene controlling variation in the salt tolerance of rapeseed (Brassica napus L.

Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study

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Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study. We confirmed multiple previously reported genome- wide significant variants in the single variant association analysis and multiple genes using PrediXcan. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material.

Genome-wide association analysis of canine T zone lymphoma identifies link to hypothyroidism and a shared association with mast-cell tumors

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Genome-wide association mapping. 2.5 standard deviations from the mean value for known European dogs were removed (Additional file 10).. The disease- genotype association was estimated using GCTA, adjusting for the first principal component of the GRM in a mixed lin- ear model to correct for cryptic relatedness [35]. It is currently unclear whether TZUS dogs share some or all of the genetic predisposition for TZL, or they simply represent normal variation among controls.

Genome-wide association analysis identified both RNA-seq and DNA variants associated to paratuberculosis in Canadian Holstein cattle ‘in vitro’ experimentally infected macrophages

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Genome wide association study (GWAS) and pathway analysis of the significant variants. Table 1 Summary statistics of the identified variants using the respective methods, from the bovine genome using DNA chip and from the transcriptome of the macrophages using RNA-seq. Nine SNPs are within a distance of 1 Kb of the transcription start site (data not shown).

Genome-wide association studies for yield component traits in a macadamia breeding population

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Quality control for genome- wide association studies. Genome-wide association studies and genomic prediction. Overview of statistical methods for genome-wide association studies (GWAS). Bolormaa S, Pryce JE, Reverter A, Zhang Y, Barendse W, Kemper K, et al. Prediction of total genetic value using genome-wide dense marker maps

Heritability and genome-wide association analyses of fasting plasma glucose in Chinese adult twins

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Heritability and Genome-Wide Association Study of Plasma Cholesterol in Chinese Adult Twins. Genome-wide efficient mixed-model analysis for association studies. A new multipoint method for genome-wide association studies by imputation of genotypes.. Novel risk genes identified in a genome-wide association study for coronary artery disease in patients with type 1 diabetes. Genome-wide association study of survival from sepsis due to pneumonia: an observational cohort study.

Linkage mapping and genome-wide association study reveals conservative QTL and candidate genes for Fusarium rot resistance in maize

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Characterization of correlation between grain moisture and ear rot resistance in maize by QTL meta- analysis. QTL mapping and candidate genes for resistance to Fusarium ear rot and fumonisin contamination in maize. Genome-wide association studies in maize: praise and stargaze. Genome-wide association study and QTL mapping reveal genomic loci associated with Fusarium ear rot resistance in tropical maize germplasm.

Genome-wide association study of milk and reproductive traits in dual-purpose Xinjiang Brown cattle

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Genome-wide association studies. Ultimately, 12 SNPs passed the 5% threshold after a Bonferroni correction and were associated with six of the 10 study traits (Fig.

Genome-wide association analyses identify known and novel loci for teat number in Duroc pigs using single-locus and multilocus models

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Genome-wide association study and accuracy of genomic prediction for teat number in Duroc pigs using genotyping-by-sequencing.. Heritability of teat number in swine. Genome-wide QTL mapping for three traits related to teat number in a white Duroc x Erhualian pig resource population

Genome-wide identification of loci associated with growth in rainbow trout

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Genome-wide association analysis with a 50K transcribed gene SNP- Chip identifies QTL affecting muscle yield in rainbow trout. Genome-wide association study for identifying loci that affect fillet yield, carcass, and body weight traits in rainbow trout ( Oncorhynchus mykiss. Involvement of the neutral amino acid transporter SLC6A15 and leucine in obesity-related phenotypes. Over-expression of the ribosomal protein L36a gene is associated with cellular proliferation in hepatocellular carcinoma.

Genome-wide association studies detects candidate genes for wool traits by resequencing in Chinese fine-wool sheep

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Genome-wide association studies detects candidate genes for wool traits by re-. Background: The quality and yield of wool determine the economic value of the fine-wool sheep. Therefore, discovering markers or genes relevant to wool traits is the cornerstone for the breeding of fine-wool sheep. A genome-wide association study (GWAS) was performed to detect the candidate genes for the eight wool traits..

Genome-wide association studies reveal candidate genes associated to bacteraemia caused by ST93-IV CA-MRSA

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To screen for potential association between gene con- tent and disease, genome-wide association studies (GWAS) can be performed by analysing single nucleo- tide polymorphisms (SNPs), and the accessory genes provided by WGS data. aureus bacteraemia isolates, no obvious associations in the number of virulence genes present in isolates from patients with and without S.

Genome-wide association mapping reveals potential novel loci controlling stripe rust resistance in a Chinese wheat landrace diversity panel from the southern autumnsown spring wheat zone

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Characterization of molecular diversity and genome-wide association study of stripe rust resistance at the adult plant stage in northern Chinese wheat landraces.. Genome-wide mapping of adult plant stripe rust resistance in wheat cultivar Toni. Genome-wide identification of QTL conferring high-temperature adult-plant (HTAP) resistance to stripe rust (Puccinia striiformis f. Genome-wide association mapping for stripe rust (Puccinia striiformis f.