New insights into the Manila clam and PAMPs interaction based on RNA-seq analysis of clam through in vitro challenges with LPS, PGN, and poly(I:C)

- To understand the molecular basis of the immune response to pathogen-associated molecular patterns (PAMPs) in R.
- philippinarum response to different PAMPs.
- To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/..
- The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data..
- Recently, the whole-genome of the Manila clam was assembled and.
- philippinarum against different PAMPs has important biological significance in the interpretation of the im- mune function of Manila clam..
- 1 The number of up- and down-regulated DEGs in the hepatopancreas of R.
- MUCL Mucin-like protein evm.model.xfSc .
- CALM Calmodulin evm.model.xfSc .
- LC Snaclec coagulation factor IX evm.model.xfSc .
- RNF213 E3 ubiquitin-protein ligase RNF213 evm.model.xfSc .
- NPC2 Epididymal secretory protein E1 evm.model.xfSc .
- Ubr2 E3 ubiquitin-protein ligase evm.model.xfSc .
- DAPK1 Death-associated protein kinase 1 evm.model.xfSc .
- DEFB Defensin-B evm.model.xfSc .
- CDH23 Cadherin-23 evm.model.xfSc .
- CRIP2 Cysteine-rich protein 2 evm.model.xfSc .
- GM2 Ganglioside GM2 activator evm.model.xfSc .
- CNR3 Cell number regulator 3 evm.model.xfSc .
- TBA3 Tubulin alpha-3 chain evm.model.xfSc .
- CATH Cathelicidin-B1 evm.model.xfSc .
- SRCR Scavenger receptor cysteine-rich evm.model.xfSc .
- LSS Lysostaphin evm.model.xfSc .
- FCGBP IgGFc-binding protein evm.model.xfSc .
- C1qL Complement C1q-like protein 4 evm.model.xfSc .
- FA10 Coagulation factor X evm.model.xfSc .
- CTL C-type lectin evm.model.xfSc .
- CELSR1 Cadherin EGF LAG seven-pass G-type receptor 1 evm.model.xfSc THAP12 52 kDa repressor of the inhibitor of the protein kinase-like Novel .
- HSP70 Heat shock 70 kDa protein evm.model.xfSc .
- CL12 Collectin-12 evm.model.xfSc .
- MMR1 Macrophage mannose receptor 1 evm.model.xfSc .
- PGRP Peptidoglycan recognition protein evm.model.xfSc .
- LTL L-type lectin evm.model.xfSc .
- FCN1 Ficolin-1 evm.model.xfSc .
- PO Peroxidase-like protein evm.model.xfSc .
- HAAF Hemagglutinin/amebocyte aggregation factor Novel08154 10.22.
- PYG Glycogen phosphorylase evm.model.xfSc .
- TLR1 Toll-like receptor 1 evm.model.xfSc .
- PAR14 Poly [ADP-ribose] polymerase 14 evm.model.xfSc .
- CO8A Collagen alpha-1(VIII) chain evm.model.xfSc .
- IFI Interferon-induced protein 44-like evm.model.xfSc .
- FREP Fibrinogen-like protein A evm.model.xfSc .
- IFI44 Interferon-induced protein 44 evm.model.xfSc .
- PAR12 Poly [ADP-ribose] polymerase 12 evm.model.xfSc .
- CAPRIN2 Caprin-2 evm.model.xfSc .
- The transcriptome comparison of the different PAMPs challenged Manila clam has provided new useful data to understand the molecular basis of the immune response to pathogens.
- Clean reads were mapped to the reference genome of the R.
- Supplementary information accompanies this paper at https://doi.org/10..
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