Long noncoding RNAs in lipid metabolism: Literature review and conservation analysis across species

- Conclusions: Such a lncRNAs catalogue can participate to the understanding of the lipid metabolism regulators.
- 60 lncRNA identified as involved in lipid metabolism by expert curation of the literature.
- The same year, Zhou et al.
- Later in the year, Smekalova et al.
- In 2017, Zhao et al.
- More re- cently, in 2018, Van Solingen et al.
- covering the 12 lncRNA previously described by Zhao et al.
- Likewise recently, Zeng et al..
- All the 60 lncRNAs we suggested as involved in lipid metabolism cover most of the types of action described so far in the literature for the noncoding genes.
- regulators of the transcription by acting at the DNA level (Fig.
- a “Co-effect “refers to a modulation of the quantity of the lncRNA in parallel with the quantity of transcripts or metabolites known to be involved in lipid metabolism.
- For ex- ample the lncRNAs described by Tristán-Flores et al..
- Note that the knockdown of this isoform in HepG2 cells was described by Liu et al.
- This is the case for lncSHGL in mouse known as B4GALT1-AS1 in human which were both mentioned in Wang et al.
- For example, the NCBI mouse gene named Gm30838 by the MGI (Mouse Gen- ome Informatics), is double named in Lo et al.
- a, d Model of protein-coding genes are from Ensembl v.92 and models of lncRNA are from the article of Fan et al.
- [101] that used ALDB v1.0, a lncRNA database (a for ALDBGALG and from the article of Chen et al.
- pig new genes in Huang et al.
- it is possible to be an extension of the protein-coding gene due to the difficulty of modelling the ends of transcripts [100].
- Fan et al.
- 3d) and whose expressions were both up-regulated in the liver of NAFLD mouse according to Chen et al.
- [20] and Foissac et al.
- NFIA-AS1 is an intronic antisense lncRNA of the NFIA gene (Nuclear Factor I A).
- In the chicken, we also found it at the same distance (56 kb) of the MYC gene..
- 4b shows the conservation of the 5 lncRNA across the 8 species.
- The expression of the 5 lncRNAs is shown in Fig.
- b Conservation of the five lncRNA (yellow) through the animal kingdom in relation to their genomic environment: protein-coding gene (blue).
- This does not preclude for expression in other tissues, because Hu et al.
- a Expression of the 5 lncRNA conserved between human and chicken.
- The aim of Fager- berg et al.
- The aim of Muret et al.
- Total RNAs was extracted from the liver of 48 chickens (from 9-weeks broilers) and mice (C57BL/6) as de- scribed by Desert et al.
- In purple: position of the siRNA used by Liu et al.
- KM and SL carried out the state of the art about lncRNAs involved in lipid metabolism.
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