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DNA binding

Tìm thấy 11+ kết quả cho từ khóa "DNA binding"

Genome-wide identification and expression analysis of the AT-hook Motif Nuclear Localized gene family in soybean

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Glyma.18G231300 AT-hook motif nuclear-localized protein 9 DNA binding Glyma.16G204400 AT-hook motif nuclear-localized protein 7 DNA binding. Glyma.07G132100 kinesin-like protein KIN-10B ATP binding. Glyma.11G023900 AT-hook motif nuclear-localized protein 5 DNA binding Type-. Glyma.17G136200 AT-hook motif nuclear-localized protein 1 DNA binding.

Entropy based analysis of vertebrate sperm protamines sequences: Evidence of potential dityrosine and cysteine-tyrosine cross-linking in sperm protamines

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It is clear from the differences in these arginine-lysine frequency distributions that the relative proportion of the DNA binding region to the whole protamine sequence is quite different for the protamine groups, especially the eutherian P2 protamines.. DNA binding region arginine-Lysine density analysis Figure 6 and Table 2 show the arginine-lysine frequen- cies in the hypothesized DNA binding regions for each protamine in the eutherian P1 and metatherian MSAs..

Characterization of nucleic acids from extracellular vesicle-enriched human sweat

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Helix-turn-helix DNA binding domain protein 132 PBI_COUNT_132 Microbacterium phage Count 927 Helix-turn-helix DNA binding domain protein 78 SEA_LIBERTYBELL_78 Streptomyces phage LibertyBell 910 Helix-turn-helix DNA binding domain protein PROCRASS1_25 Propionibacterium phage Procrass1 106 Helix-turn-helix DNA binding domain protein 76 PBI_CAMILLE_76 Microbacterium phage Camille 925 Helix-turn-helix DNA binding domain protein 90 SEA_RAINYDAI_90 Streptomyces phage Rainydai 891 Helix-turn-helix DNA binding

Analyses of inter-individual variations of sperm DNA methylation and their potential implications in cattle

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Func- tional annotation further revealed that genes associated with hypo-CMRs were engaged in basic cell-function, including transcription, DNA binding and nuclear chromatin (Add- itional file 1: Figure S3a), suggesting that these genes were mainly house-keeping genes. in motifs associated with hemopoietic development and al- ternative splicing, like MZF1 and CELF2. Methylation levels of the MHB were low in sperm but high in oocyte.

Hoạt tính trao đổi mạch DNA và bắt cặp DNA của CshA từ vi khuẩn Staphylococcus aureus phụ thuộc C-terminus

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DEAD-box Protein, CshA, DNA binding, DNA strand exchange, DNA annealing.. Protein DEAD-box là họ protein lớn được xếp vào nhóm RNA helicase với chứa chín motif được b ả o t ồ n có vai trò trong vi ệ c hình thành các liên k ế t v ớ i RNA, ho ạ t tính ATPase ph ụ thu ộ c RNA, ho ạ t tính tháo xoắn RNA phụ thuộc ATP và tham gia vào hầu hết các quá trình hoạt động RNA, bao gồm phiên mã, ghép nối, vận chuyển RNA, sinh tổng hợp ribosome, dịch mã, phân hủy RNA [1-4].

Intra-species variation within Lactobacillus rhamnosus correlates to beneficial or harmful outcomes: Lessons from the oral cavity

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Another distinctive feature of the clade of 5 clinical isolates is the antitoxin of the toxin-antitoxin (TA) defense system (AbrB/MazE/SpotVT family type DNA binding protein). rhamnosus LRHMDP2 and LRHMDP3 were found to possesses five of the six TA systems whereas L.. rhamnosus GG contained three of the six TA systems [36]. Therefore, AbrB/MazE/SpotVT family type DNA binding proteins may signify a causal role for the clade of 5 in clinical pathology..

Transcriptome analysis of early stages of sorghum grain mold disease reveals defense regulators and metabolic pathways associated with resistance

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Genes induced upon infection in RTx2911 that were also differentially expressed between the two genotypes include a JAZ re- pressor (Sobic.001G482700), isoflavone 2′-hydroxylase (Sobic.003G360900), ring finger and CHY zinc finger (Sobic.001G373100), nematode-resistance (Sobic.003G361100), WRKY DNA binding (Sobic.004G065900), and SbLYK5 (Sobic.004G076100) genes (Table 3)..

Exploring the changing landscape of cellto-cell variation after CTCF knockdown via single cell RNA-seq

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Interestingly, GO terms including regulation of transcription, DNA binding, zinc finger and transcription factor binding were significantly enriched in CTCF-KD-specific highly variable genes, implying tissue-specific genes such as transcription factors were highly sensitive to CTCF level. The dysregulation of transcription factors potentially explains why knockdown of CTCF leads to systematic change of gene expression.

Bacillus velezensis LG37: Transcriptome profiling and functional verification of GlnK and MnrA in ammonia assimilation

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The N-terminal amino acid sequences in the DNA binding domains of both TnrA and GlnR are highly-homologous sequences (17 nucleo- tides) at the minimal binding site . In the genus Bacillus, the regulatory mechanisms for N- metabolism are very diverse in response to the different concentration and the different forms of N-sources at al- tered conditions through specific strategies, to realize the assimilation of N-sources by cells [22]..

SINH HỌC PHÂN TỬ

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Các đoạn Okazaki được gắn lại với nhau nhờ men Template strand DNA ligase ligase Overall direction of replication Replication ori 5’ 3’ 5’ Helicase gắn vào mạch DNA ở vị trí và tách hai mạch của phân tử DNA Binding proteins giữ cho hai mạch khuôn tách rời Primase protein tổng hợp đoạn RNA ngắn (mồi) bổ sung với DNA Replication Hướng Overallsao chép direction 3’ of replication DNA polymerase III nối các DNA nucleotides vào đoạn mồi RNA.

Genome-wide characterization of the SPL gene family involved in the age development of Jatropha curcas

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Functional dissection of the plant-specific SBP-domain: overlap of the DNA-binding and nuclear localization domains. A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA. Comparative analysis of the SBP-box gene families in P. Molecular characterisation of the Arabidopsis SBP-box genes. Genome-wide identification and analysis of the SBP-box family genes in apple (Malus × domestica Borkh.

LncRNA: DNA triplex-forming sites are positioned at specific areas of genome organization and are predictors for Topologically Associated Domains

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DNA binding factors such as CTCF and the Cohesin complex are enriched in TAD boundaries and play a role in the specification of the boundaries and domain loops . These studies indicate that factors contributing to the medi- ation of chromatin organization have non-random en- richment in specific areas of the chromatin in relationship to the overall 3D genome organization..

Parallel selection on ecologically relevant gene functions in the transcriptomes of highly diversifying salmonids

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DNA binding 2.48E-02 1.68E . steroid hormone receptor activity 2.71E-02 2.29E-02 2 5 2 5. acetyl-CoA carboxylase activity 3.85E-02 3.52E-02 1 0 1 0. acetyl-CoA carboxylase complex 3.85E-02 3.52E-02 1 0 1 0. Lys48-specific deubiquitinase activity 3.85E-02 1.00E . Sin3 complex 3.85E-02 3.52E-02 1 0 1 0. histone H3-K4 demethylation 3.85E-02 3.52E-02 1 0 1 0. retinoic acid biosynthetic process 3.85E-02 3.52E-02 1 0 1 0.

A study on cloning and expression of stress induced DREB transcription factor gene from rice (Oryza sativa)

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The difference in the DNA-binding specificitybetween the DREB1A and OsDREB1A proteins may bedue to this conversion of the amino acid (from glutamicacid to valine) in the DNA-binding domains. The other DREB1-type proteins in the monocots (barley, wheat, and rye) also have a conserved valine in the E19 position (Figure 1b).

Genome-wide identification and expression analysis of the WRKY transcription factor family in flax (Linum usitatissimum L.)

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Role of conserved residues of the WRKY domain in the DNA-binding of tobacco WRKY family proteins. https://doi.org/10.1271/bbb.65.2428..

Multiple transcription factors co-regulate the Mycobacterium tuberculosis adaptation response to vitamin C

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The DNA-binding network of Mycobacterium tuberculosis.. Chatterjee A, et al. Global mapping of MtrA-binding sites links MtrA to regulation of its targets in Mycobacterium tuberculosis. Maciag A, et al. Global analysis of the Mycobacterium tuberculosis Zur (FurB) regulon. Slow growth of Mycobacterium tuberculosis at acidic pH is regulated by phoPR and host-associated carbon sources. Manganelli R, et al. Differential expression of 10 sigma factor genes in Mycobacterium tuberculosis.

A generative model for constructing nucleic acid sequences binding to a protein

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the DNA sequences generated by our model as binding sequences of NFKB1. 8 The alignment of the generated DNA sequences to the known NFATC1-binding aptamer [24] (top) and NFKB1-binding aptamer [25].

A ligation-based single-stranded library preparation method to analyze cell-free DNA and synthetic oligos

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SSB: Single-stranded binding protein. ssDNA: Single- stranded DNA. https://doi.org/10.. https://doi.org/10.1186/gb r119.. https://doi.org . https://doi.org/10.1073/pnas . https://doi.org/10.1126/science.1224344.. Single-stranded DNA library preparation for the sequencing of ancient or damaged DNA. https://doi.org/. Temporal response of the human virome to immunosuppression and antiviral therapy. doi.org/10.1016/j.cell . doi.org/10.1073/pnas . https://doi.org/10.1016/j.cell .

Integrating binding and expression data to predict transcription factors combined function

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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

Interaction of camel Lactoferrin derived peptides with DNA: A molecular dynamics study

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Main residues involved in the peptide-DNA interaction were identified based on binding free energy estimates calculated over 200 ns, which, as expected, confirmed strong electrostatic interactions between DNA phosphate groups and positively charged peptide side chains. Interaction between the different concentrations of CLFchimera and DNA revealed that after binding of four copies of CLFchimera to DNA, hydrogen bonds between the two strands of DNA start to break from one of the termini..