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Expression pattern

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Global assessment of organ specific basal gene expression over a diurnal cycle with analyses of gene copies exhibiting cyclic expression patterns

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Also, 4 of the 7 genes that show a circadian expression pattern in both brain and pineal gland exhibited different peak expression Ct times (Supplement Table 9).

Differential expression pattern of the proteome in response to cadmium stress based on proteomics analysis of wheat roots

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Differential expression pattern of the. Results: This study examined the chemical forms of Cd in the roots of two wheat varieties (M1019 and Xinong20) by continuous extraction and analyzed differences in distribution characteristics of Cd in the root cell wall, cytoplasm, and organelles by elemental content determination and subcellular separation.

Genome-wide analysis of spatiotemporal expression patterns during rice leaf development

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It has been suggested that the formation of the leaf sheath requires a decreasing gradient of cell prolif- eration from the abaxial side of the leaf primordium to the adaxial side, which may be associated with the expression pattern of MKB3 [11]. Thus, Os02g0172800 might be also involved in cell proliferation in leaf primordia, and its ex- pression pattern might reflect the unique cell proliferation pattern during the development of the leaf sheath..

Distinctive gene expression patterns and imprinting signatures revealed in reciprocal crosses between cattle sub-species

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The expression pattern of the 6456 DEGs between tis- sues of purebred animals was examined in the reciprocal crossbred groups. 90%) showed an additive expression pattern where both paternal and maternal genomes contributed to the gene expression levels in the crossbred groups (Fig. The tran- script levels of the DEGs involved in these significantly enriched pathways had exclusively higher expression in the purebred Bt compared with the purebred Bi..

Identification, expression, and artificial selection of silkworm epigenetic modification enzymes

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The expression pattern of BmSuv4–20 and BmDNMT2 is correlated with silkworm internal genitalia development To verify whether the mutation upstream of BmSuv4–20 and BmDNMT2 causes differential expression between wild and domestic silkworm, we assessed tissue expression in the 3rd-d of fifth instar stage of B. BmSuv4–20 was specifically expressed in internal genitalia, whereas BmDNMT2 showed a relatively broad- spectrum expression pattern in various tissues.

Identification, evolution and expression analyses of whole genome-wide TLP gene family in Brassica napus

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In conclusion, we comprehensively analyzed the evolution- ary pattern, gene structure, orthologous and paralogous genes, duplication type, gene synteny, gene duplication or losses, and gene expression pattern of TLP genes in B.. Therefore, this is the first comprehensive and systematic analyses of TLP gene family in B. This study provides useful resources for future studies on the structure and function of TLP genes in B.

RNA-Seq analysis of blood meal induced gene-expression changes in Aedes aegypti ovaries

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Since we are studying the expression pattern in ovaries, these results suggest that ovaries may take part in the oviposition site selection or they may perform totally different functions..

Identification of co-expression network correlated with different periods of adipogenic and osteogenic differentiation of BMSCs by weighted gene co-expression network analysis (WGCNA)

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Gene expression pattern during osteogenic differentiation of human periodontal ligament cells in vitro. https://doi.org/10.5051/jpis .

Homoeolog expression bias and expression level dominance (ELD) in four tissues of natural allotetraploid Brassica napus

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The overwhelming majority of gene pairs (an average of 86.7%) in B.. napus maintained their expression pattern in two diploid progenitors, and approximately 78.1% of the gene pairs showed expression bias with a preference toward the A subgenome. homologous gene pairs exhibited additive expression, ELD and transgressive expression in B. specifically, more gene pairs in stems and siliques showed ELD-A, whereas the opposite was observed in leaves and flowers.

Identification, evolution, expression, and docking studies of fatty acid desaturase genes in wheat (Triticum aestivum L.)

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Other FAB2 subfamily members showed high level of expression in all tissues except TaFAB2.1–3, TaFAB2.6–. 7, TaFAB2.9–11, TaFAB2.14, TaFAB2.16, TaFAB2.18–. 19, and TaFAB2.21–34. The expression pattern of TaFAB2.4 of the FAB2 subfamily was similar to TaFAD6.1–2 and TaFAD8.1–3 genes. The expression patterns of the TaFAD7.1–3 gene were almost similar with high transcripts level in roots (at all developmental cycles), grains, and spikes (at vegetative phase).

The global gene expression outline of the bovine blastocyst: Reflector of environmental conditions and predictor of developmental capacity

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Finally, to explore the gene expression pattern of bovine embryos caused by contrasting culture conditions that conflict with developmental capacity, IV) the gene expression profile of non-competent in vitro derived embryos (NVT) was compared with non-competent in vivo de- rived embryos (NVO) ones..

Analysis of MADS-box genes revealed modified flowering gene network and diurnal expression in pineapple

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Type I MADS-box genes could be divided into Mα, Mβ and. 7 Expression profiles of pineapple MADS-box genes in both photosynthetic and non-photosynthetic leaf tissues. 8 Relative expression of cluster l and ll MADS-box genes in green and white leaves at different time points by qRT-PCR. Table 2 Diurnal expression pattern of pineapple MADS-box genes. box genes in different organs of pineapple indicated that the pineapple MADS-box genes were expressed differently in the different tissues.

Gene expression profiling identifies pathways involved in seed maturation of Jatropha curcas

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Furthermore, GLABRA2 (GL2), a member of the HD- ZIP family, identified in cluster 3, exhibited a down- regulated expression pattern during seed development, which is in contrast with the expression pattern of iden- tified enzymes related to lipid biosynthesis pathway, where their expression increased with development of the seed. In the current study, most of the enzymes involved in lipid biosynthesis in J. curcas were identified based on the annotation of the seed transcripts.

Genome-wide characterization and expression analysis of geranylgeranyl diphosphate synthase genes in cotton (Gossypium spp.) in plant development and abiotic stresses

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Tissues specific expression of GhGGPPS genes. In earlier study, different expression pattern of GGPPS genes was observed in different organs and seedlings of A. To elucidate the roles of GhGGPPS genes in differ- ent tissues of upland cotton, 9 segmentally duplicated GhGGPPS genes were selected for qRT-PCR.

Genome-wide identification and expression analysis of PUB genes in cotton

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All the PUB genes were categorized into five subgroups (I, II, III, IV and V), and similar expression patterns were found among all PUB genes (Additional file 14: Fig. In subgroup I, 18 PUB genes with pro- found expression differences were discovered. in addition, other PUB genes in subgroup II- IV were found to have a consistent expression pattern under dif- ferent stresses.

Genome-wide identification and expression profiling of DREB genes in Saccharum spontaneum

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Colinearity and similar expression pattern of rice DREB1s reveal their functional conservation in the cold-responsive pathway. https://doi.org/10.1371/journal.. https://doi.org/10.1038/srep45226.. https://doi.org/10.1104/pp . https://doi.org/10.1046/j.1365-313X x.. https://doi.org/10.1104/. https://doi.org/10.1 016/j.compbiolchem . https://doi.org/10.11 04/pp . https://doi.org/10.1105/tpc.110.. https://doi.org/10.1038/nature07523.. https://doi.org/10.1104/pp.004374..

Genome-wide analysis, transcription factor network approach and gene expression profile of GH3 genes over early somatic embryogenesis in Coffea spp

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The CaGH3.15 expression pattern is the most correlated with embryogenic potential and with CaBBM, a C. In vitro somatic embryogenesis (SE) followed by devel- opment and acclimatization of the plantlets is an inter- esting option for achieving efficient clonal propagation, as in 2016 around 7 million coffee plants were produced through this process in Central America [5]..

Genome-wide analysis of the NAC transcription factor family in broomcorn millet (Panicum miliaceum L.) and expression analysis under drought stress

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Genome-wide analysis, expansion and expression of the NAC family under drought and heat stresses in bread wheat (T. Genome-wide sequence and expression analysis of the NAC transcription factor family in polyploid wheat. Genome- wide analysis of the NAC transcription factor family in Tartary buckwheat (Fagopyrum tataricum). Genome-wide identification and expression pattern of drought-responsive members of the NAC family in maize.

Integrative expression network analysis of microRNA and gene isoforms in sacred lotus

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To explore the expression pattern of miRNA target genes among different tissues, pairwise comparisons of these six samples were con- ducted to identify differentially expressed genes (DEGs).. To explore whether differ- entially expressed miRNAs might escalate the expression difference of their target genes between tissue samples, we calculated the proportion of DEGs in the target genes of those differentially expressed miRNAs (DEMTGs) and compared it to DEGs in the genome background.

Genome-wide identification and expression profiling of glutathione transferase gene family under multiple stresses and hormone treatments in wheat (Triticum aestivum L.)

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Characterization of the glutathione S-transferase (GST) gene family in Pyrus bretschneideri and their expression pattern upon superficial scald development. classification, and expression divergence of glutathione-transferase family in Brassica rapa under multiple hormone treatments. Comprehensive genome-wide analysis of glutathione S-transferase gene family in potato (Solanum tuberosum L.) and their expression profiling in various anatomical tissues and perturbation conditions.