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Expression profile

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Identification, structural analysis, and expression profile of genes related to starch metabolism in cassava (Manihot esculenta Crantz)

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Identification, Structural Analysis, and Expression Profile of Genes Related to Starch Metabolism in Cassava (Manihot esculenta Crantz). Starch metabolism is known to be an important pathway in the growth and development of plants.

Ontogeny of hepatic metabolism in mule ducks highlights different gene expression profiles between carbohydrate and lipid metabolic pathways

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To answer this question, an upcoming study will focus on the immediate impact of the thermal change during embryogenesis on the expression level of these genes.. 2 Relative hepatic expression of carbohydrate-related genes from E12 to D4. Box-and-whisker plots representation of expression profile of GLUT2 (a), HK1 (b), GAPDH (c), GLUT1 (d), ALDH3A2 (e), AMPK (f), INSR (g), CREB2/ATF2 (h), ALDHA7 (i), AKT (j), ChREBP (k) in the liver of mule duck during development.

Comparative analysis of gene expression profiles in differentiated subcutaneous adipocytes between Jiaxing Black and Large White pigs

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Thus, the DELs might play an essential role in the distinct adipogenesis of JX pigs.. a Unsupervised hierarchical clustering of the expression profile of twelve randomly selected DEGs. b Q-PCR validation of the expression level of twelve randomly selected DEGs. Unsupervised hierarchical clustering of the expression profile of ten randomly selected DELs. d Q-PCR validation of the expression level of ten randomly selected DELs. Validation of the DEGs and DELs.

Integrated analysis of miRNA and mRNA expression profiles in testes of Duroc and Meishan boars

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Integrated analysis of miRNA and mRNA expression profiles in testes of Duroc and Meishan boars. Results: In this study, miRNA expression profile was investigated in testes of Duroc and Meishan boars at 20, 75, and 270 days of age by high-throughput sequencing. Forty-five differentially expressed miRNAs were identified from testes of Duroc and Meishan boars before and after puberty.

Insights into the skin of caecilian amphibians from gene expression profiles

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Results: The skin of the five studied caecilian species showed a distinct gene expression profile reflecting its developmental origin and showing similarities to other epithelial tissues. We identified 59 sequences with conserved enhanced expression in the skin that might be associated with caecilian dermal specialisations. Some of the up- regulated genes shared expression patterns with human skin and potentially are involved in skin functions across vertebrates.

Genome-wide investigation of calciumdependent protein kinase gene family in pineapple: Evolution and expression profiles during development and stress

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Expression profile of the pineapple CPK genes in different tissues and development stages. Additional file 3 Figure S3 The relative expression level of CPK genes in transgenic Arabidopsis plants. Additional file 4: Table S1. Synteny blocks of CPK genes within pineapple genome. Additional file 6: Table S3. Synteny blocks of CPK genes between pineapple and Arabidopsis genomes. Additional file 7: Table S4. Synteny blocks of CPK genes between pineapple and rice genomes. Additional file 8: Table S5.

TeaCoN: A database of gene co-expression network for tea plant (Camellia sinensis)

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The gene co-expression network and expression profile heatmap of co-expressed gene were visualized by vis.js (http://visjs.. TeaCoN provides a concise and user-friendly web inter- face that allows for the predicted tea gene co-expression associations to be clearly browsed, searched, and down- loaded. In addition, gene co-expression analysis, BLAST search function, expression profile heatmap, genome browser, and GO and KEGG enrichment analysis were deployed to facilitate use of TeaCoN.

Unveiling the long non-coding RNA profile of porcine reproductive and respiratory syndrome virus-infected porcine alveolar macrophages

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Gao et al. 2a) and the expression of N protein was also confirmed in PRRSV- treated PAMs (Fig. LncRNA expression profile in PRRSV-infected PAMs Freshly isolated PAMs were treated with PRRSV HuN4 or mock, and followed by RNA-seq methodology.

Genome-wide identification and expression analysis of the NAC transcription factor family in tomato (Solanum lycopersicum) during aluminum stress

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This family seemed to be one of the largest TFs up till now. 4 Schematic representations for the distribution and duplication of 93 SlNAC genes. 5 Temporal and tissue-specific expression patterns of 93 SlNAC genes. a Expression profile of SlNAC genes in cultivated tomato cultivar Heniz.. b Expression profile of SlNAC genes in wild species S. 6 Expression profiles of the SlNAC genes under Al stress. a Hierachical clustering of expression profiles of SlNAC genes during Al stress.

Dynamic expression of Ralstonia solanacearum virulence factors and metabolism-controlling genes during plant infection

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Log 2 fold-change expression profile in the Apoplast, Early and Late Xylem of the genes involved in the T3SS regulatory cascade and downstream activated genes. apoplast and, to a lower extent, in the early and late xylem, supporting the previously mentioned hypothesis.. A small subset of flagellar genes including the motor (motA, motB), the flagellin subunit (fliC) and the fila- ment cap (fliD) among others showed low expression in the apoplast, for which we have no plausible explanation..

In silico prediction and expression profile analysis of small non-coding RNAs in Herbaspirillum seropedicae SmR1

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Expression of the 117 sRNAs of H. seropedicae SmR1 are shown in the table by Coverage and RPKM using RNA-seq data under CRT, NAR and NIT conditions.

Expression profiling of WD40 family genes including DDB1- and CUL4- associated factor (DCAF) genes in mice and human suggests important regulatory roles in testicular development and spermatogenesis

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Expression of DCAF subfamily genes during development of the mouse testis. 3 Unsupervised hierarchical clustering of mRNA expression profile of the DCAF genes subfamily across different tissues of mouse and human. Mining of FANTOM5 dataset from different developmental stages of the mouse testis detected 283 transcripts of WD40 genes.

Phylogeny-wide conservation and change in developmental expression, cell-type specificity and functional domains of the transcriptional regulators of social amoebas

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The sets with different cell- type specificity are listed in Table 2 and sets sorted with respect to similar developmental stage of expression or different combinations of stage- and cell type specificity are listed in Additional file 4: Table S3. expression, we subdivided all cell type specific TFs into subsets according to their developmental expression profile and presumptive or mature cell fate.

Genome-wide characterization, expression analyses, and functional prediction of the NPF family in Brassica napus

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Genomic survey, characterization and expression profile analysis of the peptide transporter family in rice (Oryza sativa L. Complex phylogeny and gene expression patterns of members of the NITRATE TRANSPORTER 1/PEPTIDE TRAN SPORTER family (NPF) in wheat. 10.1093/jxb/eru231.. https://doi.org/10.3390/ijms19092761.. https://doi.org/10.1093/nar/gkt1223.. https://doi.org/10.1038/nprot.2007.494.. 10.1093/bioinformatics/bti372.. https://doi.org/10.1002/. https://doi.org/10.1093/database/bav093..

Genome-wide identification and expression analysis of AP2/ERF transcription factors in sugarcane (Saccharum spontaneum L.)

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Genome-wide identification of AP2/ERF superfamily genes and their expression during fruit ripening of Chinese jujube. Genome-wide analysis of the AP2/ERF gene family in maize waterlogging stress response. Genome-wide analysis of the AP2/ERF gene family in Populus trichocarpa. Discovery and expression profile analysis of AP2/ERF family genes from Triticum aestivum. Functions and application of the AP2/ERF transcription factor family in crop improvement.

Genome-wide identification and expression profiling of glutathione transferase gene family under multiple stresses and hormone treatments in wheat (Triticum aestivum L.)

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The expression profile analyses of TaGST genes. The tissue expression profile analyses of the TaGST genes showed that more than half of TaGST genes were highly expressed in root, revealing that most TaGST genes might function in root (Fig.

Human gene expression variability and its dependence on methylation and aging

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Our investigation into human gene expression variabil- ity yielded several main findings. Lastly, we find that only a small number of Hyper-Variable. With respect to expression variance, cell type heterogeneity is likely to manifest itself in the identification of a gene as Hyper- Variable based on the fluctuating presence of a cell type with a unique gene expression profile.

Genome-wide identification, characterization, and expression analysis of the NAC transcription factor family in orchardgrass (Dactylis glomerata L.)

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Several DgNAC genes were selected to analyze the expression profile under various stresses by qRT- PCR analysis. Additional file 1 List of the 108 DgNAC genes identified in orchardgrass.. Sequences of the primers used in this study.. Additional file 5 Expression (FPKM) of DgNAC genes in different tissues.. Additional file 6 Expression (FPKM) of DgNAC genes in different floral bud development stages..

Genome-wide identification of the contextdependent sRNA expression in Mycobacterium tuberculosis

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Expression of the target genes in each of the 15 RNA-Seq data was quantified using bedtools [44]. The statistical significance of the conditional expression of sRNAs was assessed using Wilcoxon signed rank test. Expression profile of different functional categories in the mid-exponential growth phase. IGRs and AbIGRs, which are the potential sRNA encoding regions, also show significant ex- pression suggesting functional relevance of the non-protein coding re- gions.

Identification, expression, and artificial selection of silkworm epigenetic modification enzymes

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Our results show that the expression profile of Suv4–20 coincides with gamete formation in silk- worm. This implies that Suv4 – 20 and H4K20me2/me3 are involved in reproductive system development and contribute to changes in reproduction ability during.