Tìm thấy 14+ kết quả cho từ khóa "Transcriptomic analysis"
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Comparative transcriptomic analysis reveals an association of gibel carp fatty liver with ferroptosis pathway. Transcriptomic analysis between fatty liver and normal liver showed a totally different transcriptional trajectory. LPIA identified an activated ferroptosis pathway in the fatty liver. Therefore, the current study provides a clue for future studies on fish fatty liver problems.. https://doi.org/10.1186/s .
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In this study, we performed a glo- bal transcriptomic analysis to compare gene expression between PstDC3000 and its relA/spoT/fpRel triple mutant ((p)ppGpp 0 PstDC3000. syringae systems to illus- trate their similarities or differences in the global ef- fects of the (p)ppGpp-mediated stringent response.. In total to reads for each biological sample were generated for PstDC3000 and its triple mutant ((p)ppGpp 0 PstDC3000.
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CustomSelection: Custom selected reference genes outperform pre-defined reference genes in transcriptomic analysis. In: This package calculates the Transcripts Per Million data frame from the counts matrix, calculates the minimum expresion level for a gene to be considered expressed in each sample and selects as reference genes those with lowest covariance. Differential analysis of count data – the DESeq2 package.
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Comparative transcriptomic analysis of resistant and susceptible alfalfa cultivars (Medicago sativa L.) after thrips infestation. Background: Plant breeding for resistance to agricultural pests is an essential element in the development of integrated crop management systems. In this pilot study, a transcriptomic analysis of a resistant (R) vs. GN-1 ’ (China) was defined as the resistant cultivar, and ‘ WL323 ’ (America) was defined as the susceptible cultivar..
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Comparative transcriptomic analysis of the different developmental stages of ovary in red swamp crayfish Procambarus clarkii. Results: The total numbers of clean reads of the four stages ranged from to 62,220,956.
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Based on morphological observation and transcriptomic analysis combined with gene expression analysis, we found that morphological differences appeared in the early stage of ray floret development, the division of petal cells was more vigorous in tubular ray floret than flat type and the expression levels of CvCYC2b, CvCYC2d, CvCYC2e, and CvCYC2f involved in floral symmetry and CvAP2/ERF, CvSAUR71, CvGH3, CvGH3.5, and CvGA2O X1 involved in plant hormones were higher in tubular ray floret than flat
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Microarray based transcriptomic analysis of the typhus group pathogen R.
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DGE: Prodissoconch I: Genes differentially expressed in the prodissoconch I in transcriptomic analysis of development. Cross comparison of the genes highly expressed in the central mantle during shell repair. These domains are associated with proteins involved in the mollusc, and other non-vertebrate, immune re- sponses [41–43].
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Nevertheless, transcriptomic analysis of a pyriproxyfen (another JHA insecticide)-re- sistant strain of the greenhouse whitefly, Trialeurodes vaporariorum Westwood (Hemiptera: Aleurodidae) sug- gested that the most highly up-regulated CYPs (log 2 FC between 2.68 and 2.91) also belonged to the CYP6 family [62], but qPCR analysis indicated that a CYP belonging to the CYP4 family (Clan 4) is highly upregulated in the pyriproxyfen selected strain. dominica were validated by qPCR in- dicating two of them
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A comparative transcriptome analysis of the novel obligate methanotroph Methylomonas sp. A newly isolated obligate methanotroph strain, Methylomonas sp. In this study, transcriptome analysis with RNA-seq was used to investigate the transcriptional change of Methylomonas sp.. Results: We integrated genomic and transcriptomic analysis of the newly isolated Methylomonas sp. Detailed transcriptomic analysis indicated that (i) Methylomonas sp.
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In addition to the ACACA gene, the expression of the 13 genes from the BF tissue were also consistent with the results of the transcriptome analysis (Fig. 4 iRegulon analysis of the DEGs from the transcriptomic analysis. D: 24 lipid deposition-related DEGs. Most of the proteins were identified by 1–10 pep- tides (Additional file 4 B). The KEGG functional enrichment analysis of the DEPs re- vealed that the TCA cycle, pyruvate metabolism, and. Yellow: lipid deposition-related gene.
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On the basis of transcriptomic analysis, we identi- fied several heat stress responsive genes in tall fescue like U-box and F-box proteins, HSP , HSF and chaperone DnaJ-domain superfamily proteins etc.. 10 qPCR analysis of heat stress induced genes in tall fescue. 1 μ M 24-epibrassinolide for 2 days, and then heat stress (38 °C) was applied for indicated time..
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Transcriptome analysis of stylo leaves responding to Mn toxicity. In this study, comparative transcriptomic analysis in stylo leaves subjected to 5 and 400 μM Mn treatments was performed. Differentially expressed genes (DEGs) in stylo leaves exposed to Mn treatments were identified based on.
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Salt-induced changes in the plasma membrane proteome of the halotolerant alga Dunaliella salina as revealed by blue native gel electrophoresis and nano-LC-MS/MS analysis.. RNA-Seq transcriptomic analysis with Bag2D software identifies key pathways enhancing lipid yield in a high lipid-producing mutant of the non-model green alga Dunaliella tertiolecta. Transcriptome sequencing and annotation of the halophytic microalga Dunaliella salina.
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Transcriptomic analysis of the testicular fusion in Spodoptera litura. Background: Lepidoptera is one group of the largest plant-feeding insects and Spodoptera litura (Lepidoptera:. Noctuidae) is one of the most serious agricultural pests in Asia countries.
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Transcriptomic analysis of the seminal vesicle response to the reproductive toxicant acrylamide. Chief among the male accessory sex glands, secretions of the seminal vesicle are a major contributor to seminal plasma in most mammalian species [8, 9]. platforms to provide greater insight into the complexity of mouse seminal vesicle function [2]. Transcriptomic analysis of control seminal vesicle tissue returned a complex core transcriptome of 17,258 genes (Additional file 1, Table A1).
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Transcriptomic analysis of genes in soybean in response to Peronospora manshurica infection. To date, little is known regarding the defense mechanism at molecular level and how soybean plants response to Pm infection. The yield loss could be as high as 6–15% on average in the years when it was epidemic [1–4].
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Transcriptomic analysis reveals protein homeostasis breakdown in the coral Acropora millepora during hypo-saline stress. To better understand the coral response to hypo-osmotic stress, here we investigated the transcriptomic response of the coral Acropora millepora in both adult and juvenile life stages to acute (1 h) and more prolonged (24 h) exposure to low salinity..
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Transcriptomic analysis of the highly derived radial body plan of a sea urchin. Comparative developmental transcriptomics reveals rewiring of a highly conserved gene regulatory network during a major life history switch in the sea urchin Genus Heliocidaris. The sea cucumber genome provides insights into morphological evolution and visceral regeneration. Transcriptomic changes during regeneration of the central nervous system in an echinoderm.
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Transcriptomic analysis reveals the GRAS family genes respond to gibberellin in Salvia miltiorrhiza hairy roots. Background: Salvia miltiorrhiza is one of the most important traditional Chinese medicinal plants with high medicinal value. Transcriptomic sequencing revealed that many genes involved in the secondary metabolism pathway were the GA-responsive. Thereafter, members of the same subfamily showed similar conserved motifs and gene structures, suggesting possible conserved functions..