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ABC transporter

Tìm thấy 18+ kết quả cho từ khóa "ABC transporter"

Comparative and functional genomics of the ABC transporter superfamily across arthropods

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This has led to an avalanche of publications which manually annotate the ABC family of a species using a variety of different methodologies . So far, there has been little effort to systematically com- pare the ABC transporter superfamily in arthropods.. Such a comparative genomic analysis of the ABC super- family was previously accomplished in plants, [26] and a more recent study has considered the evolution of the Solute carrier (SLC) transporter superfamily in arthro- pods [27].

Genome-wide identification of ATP binding cassette (ABC) transporter and heavy metal associated (HMA) gene families in flax (Linum usitatissimum L.)

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The ABC transporter do- mains included ABC transporter (PF00005), ABC-2 transporter (PF01061), ABC transporter transmembrane region (PF00664), cytochrome c polymerization (CYT) (PF01458) or mammalian cell entry (mce) related pro- tein (PF02470). After merging the results, ABC transporter and HMA genes were further screened on the basis of their domain composition. A total of 745 ABC transporter and HMA proteins were identi- fied among all species other than those of Arabidopsis thaliana.

Structural and functional insights into the Diabrotica virgifera virgifera ATP-binding cassette transporter gene family

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Moreover, we have identified 65 members of the ABC transporter family and provided the first insights into the developmental and physiological roles of ABC transporters in this pest species..

Genome-wide identification and geneediting of pigment transporter genes in the swallowtail butterfly Papilio xuthus

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editing of pigment transporter genes in the swallowtail butterfly Papilio xuthus. However, little is known about the copy numbers of pigment transporter genes in the butterfly genomes and about the roles of pigment transporters in the development of swallowtail butterflies.. Results: Here, we have identified 56 ABC transporters and 58 Rab members in the genome of swallowtail butterfly Papilio xuthus.

Phylogenetic analysis of the ATP-binding cassette proteins suggests a new ABC protein subfamily J in Aedes aegypti (Diptera: Culicidae)

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Transcriptomic insights on the ABC transporter gene family in the salmon louse Caligus rogercresseyi.. A Survey of the ATP-Binding Cassette (ABC) Gene Superfamily in the Salmon Louse (Lepeophtheirus salmonis). Phylogenetic analysis of the ATP-binding cassette transporter family in three mosquito species. Evolution of the ATP-binding cassette (ABC) transporter superfamily in vertebrates.

Intra-species variation within Lactobacillus rhamnosus correlates to beneficial or harmful outcomes: Lessons from the oral cavity

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Candidates emerging from the distinctive set of 58 genes identified in the clade of 5 include RNA polymerase sigma-54 factor (RpoN), tran- scriptional regulators, XRE family, NtrC, MutR, iron ABC transporter permease, iron ABC transporter sub- strate- binding protein and two component sensor kin- ase with Ferric iron transporter.

Genome-wide identification of Azospirillum brasilense Sp245 small RNAs responsive to nitrogen starvation and likely involvement in plant-microbe interactions

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The highly enriched category included ABC proteins, which included ABC transporter proteins, ATP-binding protein, ABC transporter permease, ABC transporter substrate-binding protein, Amino acid ABC transporter permease, Amino acid ABC transporter substrate-binding protein, iron ABC transporter perme- ase and iron ABC transporter substrate-binding protein and was commonly predicted for 31 of the identified 59 sRNA candidates.

Transcriptome profiling provides insights into molecular mechanism in Peanut semidwarf mutant

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Arahy.BB2RVD ABC transporter B family member 19-like ABCB subfamily 3.17 1.24E E-04 up/up. Arahy.RLV4PD ABC transporter B family member 1 ABCB subfamily. Arahy.M63M99 ABC transporter B family member 11 ABCB subfamily. Arahy.YCYQ9Q uncharacterized protein LOC107461514 ABCB subfamily E E-72 down/. down Arahy.M4RITN uncharacterized protein LOC107461514 ABCB subfamily E E-04 down/. down Arahy.8QDS1I auxin-induced protein AUX22-like Aux/IAA protein E E-30 down/up.

Host plant adaptation in the polyphagous whitefly, Trialeurodes vaporariorum, is associated with transcriptional plasticity and altered sensitivity to insecticides

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However, significant differences in the two species are observed in the B and G clades with many more ABC transporter genes observed in B. tabaci in the G clade and more genes in the B clade in T. tabaci where several ABC transporter genes of the G clade were implicated in re- sistance to neonicotinoids [30].. Comparison of the UGT gene family of T.

Comparative transcriptome analysis uncovers roles of hydrogen sulfide for alleviating cadmium toxicity in Tetrahymena thermophila

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As a whole, a total of 67 DEGs were enriched in the ABC transporter pathway under Cd stress, and the ABC transporter pathway was significantly altered with NaHS addition. H 2 S physiologically alleviated growth inhibition under Cd stress and accumulation of Cd in T.

Differences in midgut transcriptomes between resistant and susceptible strains of Chilo suppressalis to Cry1C toxin

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The DEGs encoding potential Cry toxin receptors or those involved in the Cry toxin action pathway were fur- ther investigated (Table 3), including aminopeptidase-N, the ABC transporter family, alkaline phosphatase-like,. Among them, nine uni- genes encode APNs, but they were all upregulated in the FZ1C strain.

Transcriptome analysis uncovers the key pathways and candidate genes related to the treatment of Echinococcus granulosus protoscoleces with the repurposed drug pyronaridine

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Table 3 Differentially expressed ABC transporter genes following the PND treatment. HSPs are implicated in the cause and progression of various diseases, such as infections [35], cancer [36, 37], and neurodegeneration [38, 39]. Some of the HSP genes have already been identi- fied and studied in E.

Adaptation of pine wood nematode Bursaphelenchus xylophilus to β-pinene stress

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A total of 60 ABC transporter genes are present in the C. Unc-8 plays an im- portant role in the transport of modified toxic sub- stances and the maintenance of ion balance weight.. In the present study, expression of ABC transporter genes was increased by 4.56- and 2.57-fold following treatment with β-pinene at low and high con- centrations, respectively. These results suggest that ABC, Unc-8, T09B9.2, and other genes may play key roles in the transport of metabolites related to β-pinene.

Genome-wide identification and expression analysis of the AT-hook Motif Nuclear Localized gene family in soybean

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Glyma.17G112700 ABC transporter F family member 4 ATP binding. Glyma.05G151900 protein RALF-like 24 calcium-mediated signaling. Glyma.04G139900 U3 small nucleolar ribonucleoprotein protein IMP4-like snoRNA binding Glyma.03G257500 cytochrome b561 and DOMON domain-containing protein. Expression of Glyma.05G111500, Glyma.20G087200 and Glyma.06G093400 and in leaves, meristem, roots, epicotyl and hypocotyl at the VC stage.

Transcriptome analysis of fungicideresponsive gene expression profiles in two Penicillium italicum strains with different response to the sterol demethylation inhibitor (DMI) fungicide prochloraz

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A novel ABC transporter gene, PMR5, is involved in multidrug resistance in the phytopathogenic fungus Penicillium digitatum. PdMfs1, a major facilitator superfamily transporter from Penicillium digitatum, is partially involved in the imazalil-resistance and pathogenicity. Multidrug efflux transporters in the MATE family.. A transporter for abiotic stress and plant metabolite resistance in the ectomycorrhizal fungus Tricholoma vaccinum.

Investigating host-bacterial interactions among enteric pathogens

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It is to be noted that HlyB family of ABC transporter proteins have previously been shown to play vital roles in the secretion of hemolysins which is crucial for invasion of the host’s intestinal villi by V. In general, the host and the bacterial proteins which demonstrated high degree centrality in the HPI-network were also characterized by high betweenness centralities..

Transcriptome analysis reveals the roles of stem nodes in cadmium transport to rice grain

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A rice ABC transporter, OsABCC1, reduces arsenic accumulation in the grain. Role of the node in controlling traffic of cadmium, zinc, and manganese in rice. Differentially expressed miRNAs potentially involved in the regulation of defense mechanism to drought stress in maize seedlings

Comparative genomic analysis of Flavobacteriaceae: Insights into carbohydrate metabolism, gliding motility and secondary metabolite biosynthesis

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For example, GldA, GldF and GldG are similar to many putative components of the ABC transporter system, which is ubiquitous in all microorganisms [22, 33]. The majority of the strains investigated for colony spreading (5 out of 7) were non-spreading on agar under the tested conditions, even though presence of all genes encoding proteins involved in the gliding motility apparatus was predicted by the genomic ana- lysis.

Genome-wide analysis of ATP-binding cassette transporter provides insight to genes related to bioactive metabolite transportation in Salvia miltiorrhiza

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In plants, the first ABC protein was initially identified as a transporter involved in the final detoxification process [81].

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