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Average nucleotide identity


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Unexpected genomic, biosynthetic and species diversity of Streptomyces bacteria from bats in Arizona and New Mexico, USA

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The isolates, which were initially identified as three distinct species based on sequence variation in the 16S rRNA locus, could be distinguished as 41 different species based on genome-wide average nucleotide identity. Of the 32 biosynthetic gene cluster (BGC) classes detected, non-ribosomal peptide synthetases, siderophores, and terpenes were present in all genomes.

Whole genome analysis of the koa wilt pathogen (Fusarium oxysporum f. sp. koae) and the development of molecular tools for early detection and monitoring

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The average nucleotide identity (ANIm) between Fo koae 44 and Fo 170 was 96.5%. Further analyses comparing the putative chromosomes of Fo koae 44 and Fo 170 indicated that variants (SNPs and indels) were lo- calized on specific chromosomes (LSX_44 and LSX_170) and at chromosome ends (Fig. oxysporum transposable elements (e.g., Foxy, Skippy, Impala, Hop, Mariner, Hat, and Helitron) occurred on the LSX of both Fo koae 44 and Fo 170 [29].

Complete genome sequence of Arthrobacter sp. PAMC25564 and its comparative genome analysis for elucidating the role of CAZymes in cold adaptation

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Comparison of Arthrobacter sp. 2 Phylogenetic tree of Arthrobacter sp. 3 Orthologous Average Nucleotide Identity of Arthrobacter sp.

Whole-genome analysis of probiotic product isolates reveals the presence of genes related to antimicrobial resistance, virulence factors, and toxic metabolites, posing potential health risks

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In the genome of S. a Species identification based on whole genome average nucleotide identity (ANI). b Species identification based whole genome using rMLST. c Species identification based whole genome using TYGS. In the genome of E. 90%) were found in the genomes of nine isolates (Fig. 4), suggesting that IS6 and IS3 contribute in the transfer of these virulence factors. In the genome of L..

Comparative analysis of Lactobacillus gasseri from Chinese subjects reveals a new species-level taxa

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gasseri, 92 strains of L. gasseri were isolated from Chinese human feces and identified based on 16 s rDNA sequencing, after draft genomes sequencing, further average nucleotide identity (ANI) value and phylogenetic analysis reclassified them as L. paragasseri had an open pan-genome. Comparative analysis was carried out to identify genetic features, and the results indicated that 39 strains of L.

Comparative genomic analysis of Vibrios yields insights into genes associated with virulence towards C. gigas larvae

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Heatmap and dendrogram of Average Nucleotide Identity (ANI) calculations between pairs of different Vibrio strains, including strains used in this study and reference strains. Phylogenetic Tree of strains used in this study and reference strains. Core and Pan-genome of 51 isolates in this study. Gene organization of the CPI-1 region within the complete genome of V. Yellow slashed lines indicate contig breaks on the CPI-1 of the V.

Molecular characterization of Pseudomonas from Agaricus bisporus caps reveal novel blotch pathogens in Western Europe

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They were also closely related to the Pseudo- monas sp. 4 Heatmap from whole-genome similarity values obtained in the Average Nucleotide Identity analysis. Colours of the heatmap indicate the pairwise genome-genome similarity. The labels on the y-axis are coloured according to the identity assumed from the MLSA analyses. the labels on the x-axis are coloured according to the pathogenicity of the isolates on fresh mushroom caps, and in select cases also pot tests.

Hybrid genome de novo assembly with methylome analysis of the anaerobic thermophilic subsurface bacterium Thermanaerosceptrum fracticalcis strain DRI-13T

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Strain DRI-13 T is a novel genus in the Peptococcaceae family with an average nucleotide identity of 66% with its two closest relatives (Pelotoma- culum propionicicum GCA and Pelotoma- culum thermopropionicum GCA . DRI-13 T genome is available from JGI and NCBI GCA_. fracticalcis DRI-13 T Hybrid genome assembly comparison. fracticalcis DRI-13 T. GCA Locus: ELL41697) was compared to strain DRI-13 T by BLAST checking for mis-annotation, but yielded no result.

Genomic characterization of an emerging Enterobacteriaceae species: The first case of co-infection with a typical pathogen in a human patient

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The average nucleotide identity (ANI) matrix of the 34 strains (Fig. 95% regarded as strains of the same species [17]) are nominated as [Kluyvera] intestini (GCA_. S rDNA classification found two more strains of the spe- cies, namely Enterobacteriaceae bacterium ENNIH1, and Phytobacter ursingii strain CAV1151 (Table S3).

Novel approach in whole genome mining and transcriptome analysis reveal conserved RiPPs in Trichoderma spp

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Next, we evaluated the potential of the RiPPMiner to detect RiPP precursors in known RiPP BGCs and distinguish them from functional polypeptides. 2 Heatmap of the average nucleotide identity (ANI) between the analyzed fungal species. The dendrogram in the heatmap is computed with the complete linkage method to find similar clusters based on the Euclidean distance, representing a whole genome phylogeny. for putative RiPP precursors.

Benchmarking hybrid assembly approaches for genomic analyses of bacterial pathogens using Illumina and Oxford Nanopore sequencing

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Average Nucleotide Identity (ANI) of the hybrid assemblies of bacterial strains with simulated Illumina short reads and low-quality Oxford Nanopore long reads using MaSuRCA, SPAdes, and Unicycler, as determined by aligning to their corresponding refer- ence genomes and expressed as OrthoANIu values.

Virulence characterization and comparative genomics of Listeria monocytogenes sequence type 155 strains

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LIPI-1 con- sists of the genes actA (actin-assembly inducing protein, nucleotide identity between 98.25 and 99.17% with EGD-e), hly (listeriolysin O, nucleotide identity between 98.99 and 99.06% with EGD-e), mpl (metalloprotease, nucleotide identity between 99.74 and 99.80% with EGD-e), plcA (phosphatidylinositol-specific phospholip- ase C, nucleotide identity between 98.85 and 98.95%. 712, which includes the first base of the stop codon (TAA). monocytogenes ST155 strains.

Analysis of oral microbiome from fossil human remains revealed the significant differences in virulence factors of modern and ancient Tannerella forsythia

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Interestingly, the average nucleotide coverage of bspB was ~ 5 times higher than the average nucleotide coverage of the PCA0088 genome (7.03) and ~ 3 times higher than the average nucleotide coverage of the PCA0198 genome (9.81) (Supplementary Table 4 A). 5), indicated a general sequence variability of the bspA gene.

Evolution of Fusarium tricinctum and Fusarium avenaceum mitochondrial genomes is driven by mobility of introns and of a new type of palindromic microsatellite repeats

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Notably, percentages of nucleotide identity between the various orthologous sequences included in this study were highly variable, arguing for different origins and evo- lution of the intronic sequences..

GeneMates: An R package for detecting horizontal gene co-transfer between bacteria using gene-gene associations controlled for population structure

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Using Bandage and nucleotide BLAST, we confirmed co-localisation of these alleles in a 3,084 bp region that was present in 10 out of the 13 genomes with a 100% nucleotide identity and coverage, and these 10 genomes were sparsely distributed across the phylogenetic tree in Fig.

Chỉ báo ATR Average True Range là gì

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Sử dụng chỉ báo ATR Như đã lưu ý, Average True Range không được sử dụng nhiều làm chỉ số. Average True Range là thước đo độ biến động, khi Average True Range có giá trị thấp tức là đang có ít hoạt động và khi Average True Range ở mức cao nghĩa là thị trường nhiều hoạt động diễn ra.

Từ vựng Unit 5 lớp 12 Cultural Identity

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UNIT 5: CULTURAL IDENTITY VOCABULARY. attire /əˈtaɪə(r)/ (n): quần áo, trang phục. cultural identity /ˈkʌltʃərəl aɪˈdentəti/: bản sắc văn hóa. các hoạt động văn hóa, tập quán văn hóa. custom /ˈkʌstəm/ (n): phong tục, tập quán. multicultural /ˌmʌltiˈkʌltʃərəl/( a): đa văn hóa. national custome /ˌnæʃnəl ˈkɒstjuːm/: trang phục dân tộc. solidarity /ˌsɒlɪˈdærəti /(n): sự đoàn kết, tình đoàn kết. unite /juˈnaɪt/ (v): đoàn kết

Excel - Hàm AVERAGE, hàm tính trung bình cộng

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Excel - Hàm AVERAGE, hàm tính trung bình cộng, ví dụ minh họa. Trung bình cộng của một dãy số trong toán học là thương số giữa tổng giá trị của dãy số đó và số phần tử trong dãy. Hàm AVERAGE trong excel là hàm trả về giá trị trung bình cộng của một dãy số. Với cú pháp đơn giản của hàm AVERAGE ta có thể thực hiện tính trung bình cộng của dãy số một cách đơn giản và nhanh chóng hơn rất nhiều..

Bài tập tiếng Anh lớp 12 Unit 5 Cultural Identity

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BÀI TẬP TIẾNG ANH LỚP 12 MỚI THEO UNIT UNIT 5: CULTURAL IDENTITY CÓ ĐÁP ÁN. Mark the letter A, B, C or D to indicate the word whose underlined part differs from the other three in pronunciation in each of the following questions.. Mark the letter A, B, C or D to indicate the word that differs from the other three in the position of the primary stress in each of the following questions.. identity Part II.

Giải bài tập SGK Tiếng Anh lớp 12 Chương trình mới Unit 5: Cultural identity

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Hope you're all working on your essay on cultural identity. I'm not quite sure about how people express their cultural identity.. why people need to protect their cultural identity.. cultural practices. According to Yumi, why do people need to protect their cultural identity?.