Tìm thấy 14+ kết quả cho từ khóa "Comparative genomic analysis"
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Flagella by numbers: comparative genomic analysis of the supernumerary flagellar. The flag-3 and flag-4 loci encode predicted peritrichous flagellar systems while the flag-5 locus encodes a polar flagellum. Phylogenetic analyses indicate the complex evolutionary histories of the flagellar systems among the Enterobacterales..
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The present analysis attempted to revise and update comprehensive eutherian fibroblast growth factor gene data sets, and address and resolve major discrepancies in their descriptions using eutherian comparative genomic analysis protocol and 35 public eutherian reference genomic sequence data sets..
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The comparative genomic analysis of 142 Salmonella enterica subsp. The high diversity among prophages may well be a mechanism developed to generate new mole- cules and decoys to thwart the potent, anti-viral defence mechanism of the bacterial host.
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Genome annotation and comparative genomic analysis The draft assemblies of the seven strains sequenced in this study were uploaded to the Integrated Micro- bial Genomes and Microbiomes (IMG/M version 5.0) system [115], and metadata was submitted to the Ge- nomes OnLine Database (GOLD) [116].
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The purpose of this study was to explore the genomic basis of c-di-GMP signaling in M. In this study, c-di-GMP metabolism and regulation in M. Meanwhile, we performed comparative genomic analyses based on phylogenetic, phylogenomic, positive se- lection, and pan-genome analyses of these strains to com- prehensively analyze the c-di-GMP signaling genes. The comparative genomic analysis will help elucidate c-di-GMP metabolism and relevant signal regulation processes in cyanobacteria..
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Genome-wide analysis of single nucleotide polymorphisms in Bordetella pertussis using comparative genomic sequencing. Comparative genomics of Bordetella pertussis reveals progressive gene loss in Finnish strains. Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica. Insight into evolution of Bordetella pertussis from comparative genomic analysis: evidence of vaccine-driven selection.
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Virulence characterization and comparative genomics of Listeria monocytogenes. Background: Listeria (L.) monocytogenes strains show a high diversity regarding stress tolerance and virulence potential. We evaluated the virulence potential of 20 ST155 strains and performed comparative genomic analysis of 130 ST155 strains isolated from food, food processing environments and human listeriosis cases in different countries and years..
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Keywords: Streptococcus pneumoniae , Serotype 1, Whole genome sequencing, Comparative genomic analysis. Full list of author information is available at the end of the article.
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Such a comparative genomic analysis of the ABC super- family was previously accomplished in plants, [26] and a more recent study has considered the evolution of the Solute carrier (SLC) transporter superfamily in arthro- pods [27]. Here, we extend the knowledge of the ABC trans- porter superfamily in arthropods through comparative and functional genomics.
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Genomic dissection of the most prevalent Listeria monocytogenes clone, sequence type ST87, in China. Background: Listeria monocytogenes consists of four lineages that occupy a wide variety of ecological niches.. Sequence type (ST) 87 (serotype 1/2b), belonging to lineage I, is one of the most common STs isolated from food products, food associated environments and sporadic listeriosis in China. Here, we performed a comparative genomic analysis of the L.
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In the present study, a comparative genomic analysis was performed on 20 high-quality carnivore ge- nomes. carnivores and identified fixed amino acid changes in different body size groups. Using the results of from the above analyses, we hope to provide some novel insights into the molecular mechanism behind body size evolution in carnivores and mammals..
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All analysis was carried out using default parameters without bootstrapping in the software MEGA 7.0.. Genome completeness analysis through applied BUSCO software (version 3.0.1) to align the orthologs of the NGR to a reference gene set of basidiomycota_odb9. GO/KEGG enrichment results of species-specific genes of the NGR.. NZ and HTZ supervised the written process of the paper.
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BUSCO analysis of KitaakeX and comparison with other rice genomes. Sequence length of pseudomolecules, number of genes and gene models for each of the 12 rice chromosomes.. Additional file 4. Comparative genomic analysis between KitaakeX and Nipponbare. Additional file 5. Comparative genomic analysis between KitaakeX and Zhenshan97. Additional file 6. SNPs between KitaakeX and Zhenshan97.. Genomic variation showing gene variations between KitaakeX and Nipponbare and ZS97.
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analysis of the assemblies of GP3 and ZY..
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Comparative genomic analysis of the flagellin glycosylation island of the gram-positive thermophile Geobacillus. Phylogenomic analyses of Bradyrhizobium reveal uneven distribution of the lateral and subpolar flagellar systems, which extends to Rhizobiales. Stepwise formation of the bacterial flagellar system
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Comparative genomic analysis of STEC O145:H25 strain EN1I-0044-2 against the chromosome sequence of refer- ence STEC strains revealed that there was significant con- servation of the chromosomal backbone among STEC strains, as previously described .
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Comparative population genomic analysis uncovers novel genomic footprints and genes associated with small body size in Chinese pony. Background: Body size is considered as one of the most fundamental properties of an organism. Debao pony (DBP), a famous Chinese horse, is known for its small body size and lives in Guangxi mountains of southern China.
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Comparative genomic analysis of Ehrlichia sp. 1 Circular representation of Ehrlichia sp. Whole genome alignments demon- strate that the Ehrlichia sp. However, Ehrlichia sp. eauclairensis, and Ehrlichia sp. chaffeensis-specific proteins, there are less than 10 species-specific proteins present in Ehrlichia sp. Two-way comparisons identified further proteins that are unique to Ehrlichia sp. For example, compared to Ehrlichia sp. 1 Abbreviations: EHF Ehrlichia sp.
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In the case of the P. pacificus, pre- vious versions of gene annotations that were completely based on the results of gene prediction tools were suited to perform evolutionary genomic analysis and genetic screens [37, 38]. Comparative analysis of genome quality for 22 nematode species revealed that already these gene annotations (version: El Paco annotation V1) were of relatively high quality (86% BUSCO completeness) [23]..
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Comparative Transcriptome analysis reveals molecular basis underlying fast growth of the selectively bred Pacific oyster, Crassostrea gigas. Transcriptome analysis of the pearl oyster ( Pinctada fucata ) hemocytes in response to Vibrio alginolyticus infection. Conservation of the chitin utilization pathway in the Vibrionaceae. Identification of chitin in the prismatic layer of the Shell and a chitin synthase gene from the Japanese pearl oyster, Pinctada fucata.