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Differentially expressed transcripts

Tìm thấy 13+ kết quả cho từ khóa "Differentially expressed transcripts"

Proteomic and transcriptomic analyses of early and late-chronic Toxoplasma gondii infection shows novel and stage specific transcripts

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The N-terminal region of sporoAMA1 includes a binding domain to the T. 6 Differentially expressed transcripts during late-chronic infection. a The number of differentially expressed transcripts (>. b Differentially expressed transcripts during late-chronic infection. stage specific isoforms, with the expression of the short- est isoform starting in late chronic infection and longer isoforms expressed during different stages of the cat cycle..

Transcriptomics analysis of Toxoplasma gondii-infected mouse macrophages reveals coding and noncoding signatures in the presence and absence of MyD88

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Wild type BMDM were infected with either the highly virulent RH strain or the less-virulent PTG strain, and 6 h later RNA was isolated for sequencing. 4 Many non-coding transcripts are differentially expressed during infection with Toxoplasma. a Classification of differentially expressed mouse non-coding transcripts by type. d List of all noncoding transcripts differentially expressed between RH and PTG. e List of all noncoding differentially expressed transcripts shared between RH and PTG infection

Characterising the mechanisms underlying genetic resistance to amoebic gill disease in Atlantic salmon using RNA sequencing

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A total of 115 and 42 differentially expressed transcripts (following multiple-testing correction, false discovery rate (FDR) p-value <. Most differentially expressed transcripts in head kidney were not obviously related to AGD or disease resistance. To gain an overall view of the results, a Gene Ontology (GO) enrichment test was performed in both gill and head kidney for sets of differentially expressed transcripts according to three different significance criteria (p-value <.

RNA-sequencing based gene expression landscape of guava cv. Allahabad Safeda and comparative analysis to colored cultivars

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MAPMAN analysis of differentially expressed transcripts of apple color skin vs green skin of Apple Color – CISH-G5, shows up-regulation of the secondary metabolism pathway. Additional file 11 : Figure S6. Cluster analysis of differentially expressed transcripts among fruit stages of Allahabad Safeda (AS), Apple Color (AC) and Punjab Pink (PP) immature fruit (ImF), mature fruit (MF), 3 days after harvesting (3DF), 7 days after harvesting (7DF), green peel and red peel..

Comparative RNA-Seq transcriptome analyses reveal dynamic time-dependent effects of 56Fe, 16O, and 28Si irradiation on the induction of murine hepatocellular carcinoma

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A complete list of unannotated transcript ENSMBL IDs with their corresponding module num- bers is provided in the Supplemental Table 18.. 5 IPA of differentially expressed transcripts in 28 Si. f The Venn Diagram shows shared and unique differentially expressed transcripts for all time points, in 28 Si irradiation compared to control.

Sub-fertility in crossbred bulls: deciphering testicular level transcriptomic alterations between zebu (Bos indicus) and crossbred (Bos taurus x Bos indicus) bulls

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Pathway analysis of differentially expressed transcripts in crossbred bull testis. A total of 21 genes are involved in PI3K-Akt signalling pathway and 13 genes are involved in Jak-STAT signalling pathway (Additional file 7).. 1 Functional classification of upregulated transcripts in crossbred testes based on the gene ontology terms.

Transcriptome responses to different herbivores reveal differences in defense strategies between populations of Eruca sativa

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Clustering in heat-maps of the significantly differentially expressed transcripts, which differentiated between the transcriptome profiles of the two populations and be- tween ER and LR (Fig. 5), aided interpretation of the dif- ferences between the responses of plants of the two populations to the elicitation treatments. The second group included transcripts that differentiated between the transcriptome profiles of plants of the two populations (i.e., clade B in Fig.

A study of the heterochronic sense/ antisense RNA representation in florets of sexual and apomictic Paspalum notatum

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Then, at least a part of the differentially expressed transcripts detected at anthesis might be related alternatively to the induc- tion of parthenogenesis or to embryo development, since, at anthesis, embryos are forming in apomictic plants only. Interestingly, a methylation-mediated silencing mechanism was reported to control partheno- genesis in other species of the Paspalum genus [77].

Transcriptomic analyses of Aedes aegypti cultured cells and ex vivo midguts in response to an excess or deficiency of heme: A quest for transcriptionally-regulated heme transporters

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Transcriptomic analysis of these cell lines and midgut tis- sue resulted in the identification of differentially expressed transcripts, including those containing multipass trans- membrane domains associated with potential transport of heme. A subset of the genes found differentially expressed in both midgut epithelial cells and cultured cells were analyzed through RNAi knockdown;.

Transcriptional profile of oil palm pathogen, Ganoderma boninense, reveals activation of lignin degradation machinery and possible evasion of host immune response

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The RNAseq data acquired in this single time-point pilot study provides a snapshot of the differentially expressed transcripts during G. the one analyzed in this study, had replicated measures of the transcriptional changes that occur during G. However, wood decay fungi act slowly, and it is likely that early sampling of the inter- action might not reveal much about the transcriptional changes occurring during host colonization.

Transcriptome profiles of Quercus rubra responding to increased O3 stress

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Finally, de novo assembly of the RNA sequence data followed by functional annotation of the differentially expressed transcripts was conducted to build a catalog of tran- scripts in response to O 3 stress for NRO.. RNA libraries were sequenced from a wide variety of NRO tissues to provide good coverage of the gene space reads) (Add- itional file 1: Table S1). Transdecoder predicted an open reading frame (ORF) in of the pu- tative transcripts.

Transcriptome analysis and molecular mechanism of linseed (Linum usitatissimum L.) drought tolerance under repeated drought using single-molecule long-read sequencing

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Bubble diagram showing the GO classification of differentially expressed transcripts between Z141 and NY- 17 under DS or RD treatment. (c-f) GO terms of genes up- (c, d) or downregulated (e, f) in Z141 or NY- 17 under only DS. (g-j) GO terms of genes up- (g, h) or downregulated (i, j) in Z141 or NY-17 under only RD.. Additional file 14: Table S12 The GO analysis result of DEGs both up- or down-regulated in Z141 and NY-17 under DS or RD stress..

Formation of autotriploid Carassius auratus and its fertility-related genes analysis

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The abscissa represents P value, which decreases with increase in significance in enrichment level of differentially expressed transcripts in the pathway. The ordinate represents log10 (Q value), which increases with increase in significance of differentially expressed transcripts in the pathway.

Genome-wide analysis of differentially expressed mRNAs, lncRNAs, and circRNAs in chicken bursae of Fabricius during infection with very virulent infectious bursal disease virus

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All the differentially expressed mRNAs in this study.. All the differentially expressed lncRNAs in this study.. All the differentially expressed circRNAs in this study.. Gene ontology enrichment analysis for the antisense, cis, and trans roles of the differentially expressed lncRNAs in chicken BF between the two groups. Kyoto Encyclopedia of Genes and Genomes pathway enrichment for the antisense, cis, and trans roles of the differentially expressed lncRNAs in chicken BF between the two groups.

Transcriptome profiling analysis of sexbased differentially expressed mRNAs and lncRNAs in the brains of mature zebrafish (Danio rerio)

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To investigate the biological function of the sex- related lncRNAs in zebrafish brain, the lncRNAs were. 1 Characterization and verification of differentially expressed genes. (b) Hierarchical clustering analysis of mRNAs that are differentially expressed between the female and male zebrafish samples. (c) Significantly differentially expressed genes by RT-qPCR. 2 GO and KEGG analyses of differentially expressed genes. a GO enrichment analysis of the differentially expressed genes.

Global scale transcriptome analysis reveals differentially expressed genes involve in early somatic embryogenesis in Dimocarpus longan Lour

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The transcripts of flavonoid biosynthesis related genes were mainly expressed in NEC, while fatty acid biosynthesis related genes mainly accumulated in early SE. Conclusion: This study provides new insights into the role of the transcriptome during early SE in longan.. Differentially expressed genes reveal that plant hormones signalling, flavonoid and fatty acid biosynthesis, and extracelluar protein related genes were involved in longan early SE.

Proteomic profiling reveals differentially expressed proteins associated with amylose accumulation during rice grain filling

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Identified differentially expressed proteins in Luliangyou 996 compared to Lingliangyou 268. Gene Ontology (GO) enrichment analysis of differentially expressed proteins. Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis of differentially expressed proteins.. The authors thank those who have been at the forefront of the fight against the 2019 novel coronavirus for allowing us to have peace of mind to concentrate on writing this manuscript..

Comprehensive analysis of differentially expressed circRNAs and ceRNA regulatory network in porcine skeletal muscle

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Comprehensive analysis of differentially expressed circRNAs and ceRNA regulatory network in porcine skeletal muscle. Background: Circular RNA (circRNA), a novel class of non-coding RNA, has a closed-loop structure with important functions in skeletal muscle growth. The purpose of this study was to investigate the role of differentially expressed circRNAs (DEcircRNAs), as well as the DEcircRNA-miRNA-mRNA regulatory network, at different stages of porcine skeletal muscle development.

Transcriptome and microbiome of coconut rhinoceros beetle (Oryctes rhinoceros) larvae

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Some of the most highly expressed transcripts were not differentially expressed, as they were highly expressed in all or most tissues. The most highly and differen- tially expressed genes in the fat body were collagen, lipid-related genes like apolipophorins and fatty acyl-. Sev- eral antimicrobial peptides were highly and differentially expressed in the fat body.

Genome-wide identification and comparison of differentially expressed profiles of miRNAs and lncRNAs with associated ceRNA networks in the gonads of Chinese soft-shelled turtle, Pelodiscus sinensis

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The predicted target genes of these differentially expressed (DE) miRNAs and lncRNAs included abundant genes related to reproductive regulation. The target genes for the differentially expressed miRNAs and lncRNAs included abundant genes involved in gonadal development, including Wt1, Creb3l2, Gata4, Wnt2, Nr5a1, Hsd17, Igf2r, H2afz, Lin52, Trim71, Zar1, and Jazf1..