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Noncoding RNA

Tìm thấy 20+ kết quả cho từ khóa "Noncoding RNA"

Analysis of histology and long noncoding RNAs involved in the rabbit hair follicle density using RNA sequencing

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Integrated analysis of the roles of long noncoding RNA and coding RNA expression in sheep (Ovis aries) skin during initiation of secondary hair follicle. Systematic analysis of non-coding RNAs involved in the angora rabbit (Oryctolagus cuniculus) hair follicle cycle by RNA sequencing. The functions of ocu-miR-205 in regulating hair follicle development in Rex rabbits. Variation in the caprine keratin-associated protein 15-1 (KAP15-1) gene affects cashmere fibre diameter.

Pan-tissue transcriptome analysis of long noncoding RNAs in the American beaver Castor canadensis

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Of the 40 lncRNA contigs for which a high-confidence ortholog gene could be identified, the ortholog annota- tions included 16 long noncoding RNA genes, 12 non- coding antisense RNAs, ten noncoding isoforms of protein-coding genes, and two sense-overlapping RNAs (Table 3).

Long noncoding RNAs in lipid metabolism: Literature review and conservation analysis across species

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Regulation of the apolipoprotein gene cluster by a long noncoding RNA.. Qin W, Li X, Xie L, Li S, Liu J, Jia L, et al. Zhao X-Y, Li S, DelProposto JL, Liu T, Mi L, Porsche C, et al. Polycarpou-Schwarz M, Groß M, Mestdagh P, Schott J, Grund SE, Hildenbrand C, et al. Cao C, Fan R, Zhao J, Zhao X, Yang J, Zhang Z, et al. Reddy MA, Chen Z, Park JT, Wang M, Lanting L, Zhang Q, et al. Yang L, Li P, Yang W, Ruan X, Kiesewetter K, Zhu J, et al. Liu C, Yang Z, Wu J, Zhang L, Lee S, Shin D-J, et al.

IRLnc: A novel functional noncoding RNA contributes to intramuscular fat deposition

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In order to explore the potential lincRNA-RNA interaction, we calculate the interaction energy of IRLnc and NR4A3..

Unveiling the long non-coding RNA profile of porcine reproductive and respiratory syndrome virus-infected porcine alveolar macrophages

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Genome-wide analysis of long noncoding RNA and mRNA profiles in PRRSV-infected porcine alveolar macrophages. Genome-wide analysis of long noncoding RNA profiling in PRRSV-infected PAM cells by RNA sequencing. Global miRNA, lncRNA, and mRNA Transcriptome profiling of endometrial epithelial cells reveals genes related to porcine reproductive failure caused by porcine reproductive and respiratory syndrome virus.

Integrated analysis of the responses of a circRNA-miRNA-mRNA ceRNA network to heat stress in rainbow trout (Oncorhynchus mykiss) liver

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Some important genes and noncoding RNA were identified under heat stress in the ceRNA regulatory network, such as hsp90ab1, HSPA13, miR-18-y, novel-m0556-3p, etc..

Genome-wide identification and functional prediction of long non-coding RNAs in Sprague-Dawley rats during heat stress

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Immobilization of proteins in the nucleolus by ribosomal intergenic spacer noncoding RNA. Cardiovascular function in the heat-stressed human

Differential expression of miRNAs in the presence of B chromosome in the cichlid fish Astatotilapia latifasciata

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The repetitive DNA element BncDNA, enriched in the B chromosome of the cichlid fish Astatotilapia latifasciata, transcribes a potentially noncoding RNA. https://doi.org/10.1007/s x.. doi.org/10.1007/s . https://doi.org/10.3390/. https://doi.org/10.1016/S X.. Epigenetic DNA modifications are correlated with B chromosomes and sex in the cichlid Astatotilapia latifasciata.

Identify RNA-associated subcellular localizations based on multi-label learning using Chou’s 5-steps rule

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Rnalocate: a resource for rna subcellular localizations. Lncatlas database for subcellular localization of long noncoding rnas.. The lncLocator: a subcellular localization predictor for long non-coding RNAs based on a stacked ensemble classifier. https://doi.org/. Prediction of microrna subcellular localization by using a sequence-to-sequence model.

LncRNAs and their regulatory networks in breast muscle tissue of Chinese Gushi chickens during late postnatal development

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Although many genes play important roles in chicken muscle growth, studies have shown that only a small percentage (1–2%) of the genome encodes proteins in mammals, and tens of thousands of intergenic sites are transcribed into noncoding RNA [9]. In the past few years, regulatory RNAs, such as miRNAs, piRNAs, snoRNAs, and long noncoding RNAs (lncRNAs), have appeared to play roles in many important biological processes [10].

Transcriptome analysis reveals potential function of long non-coding RNAs in 20- hydroxyecdysone regulated autophagy in Bombyx mori

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Identification and characterization of a new long noncoding RNA iab-1 in the Hox cluster of silkworm, Bombyx mori identification of iab-1. Larval fat body cells die during the early pupal stage in the frame of metamorphosis remodelation in Bombyx mori. Fat body remodeling and homeostasis control in Drosophila. 20-Hydroxyecdysone- upregulated proteases involved in Bombyx larval fat body destruction.

FishDB: An integrated functional genomics database for fishes

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For piRNA and long noncoding RNA (lncRNA), a total of 1,330,692 piRNAs and 4852 lncRNAs of Danio rerio Table 1 Summary of the data content of FishDB. Table 2 The distribution of fish genome resource. FishDB 303 91 http://fishdb.ihb.ac.cn. c Page of ortholog in fish genomes. We also predicted CDS and UTR using TransDecoder from tran- scriptome sequences, producing CDS and UTR se- quences for a total of 230 fish.

Genome‑wide integrated analysis demonstrates widespread functions of lncRNAs in mammary gland development and lactation in dairy goats

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Result: In the present study, we profiled long noncoding RNA (lncRNA) expression in the mammary gland tissues of Laoshan dairy goats ( Capra hircus ) from different lactation periods at the whole-genome level, to identify, characterize and explore the regulatory functions of lncRNAs.

Genomewide analysis of circular RNA in pituitaries of normal and heat-stressed sows

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It has been reported that several noncoding RNAs may regulate animals ’ response to heat stress which can be easily induced by hyperthermia in summer. However, the expression and functions of circRNAs in the pituitary of sows and whether they participate in heat stress adaption are still unclear..

Integrated analysis of lncRNA, miRNA and mRNA reveals novel insights into the fertility regulation of large white sows

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Long noncoding RNA and mRNA expression profiles in the thyroid gland of two phenotypically extreme pig breeds using Ribo-zero RNA sequencing. miR-1306 mediates the feedback regulation of the TGF- β /SMAD signaling pathway in Granulosa cells. Cloning and characterization of the mouse interleukin enhancer binding factor 3 (Ilf3) homolog in a screen for RNA binding proteins.

Genome-wide detection and sequence conservation analysis of long non-coding RNA during hair follicle cycle of yak

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Systematic Analysis of Non-coding RNAs Involved in the Angora Rabbit (Oryctolagus cuniculus) Hair Follicle Cycle by RNA Sequencing. The seasonal development dynamics of the yak hair cycle transcriptome. Systematic analysis of long noncoding RNAs in the senescence-accelerated mouse prone 8 brain using RNA sequencing. Comparative expression dynamics of Intergenic long noncoding RNAs in the genus drosophila. Whales originated from aquatic artiodactyls in the Eocene epoch of India

Characterization of genome-wide variations induced by gamma-ray radiation in barley using RNA-Seq

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In contrast, whole-transcriptome analysis with total RNA sequencing (RNA-Seq) reveal all coding genes and also multiple forms of noncoding RNAs, offering a cost-effective alter- native to the whole-genome sequencing for investigating genetic variants in coding regions, in which mutations are likely to lead to the change of phenotype..

Identification of polycistronic transcriptional units and non-canonical introns in green algal chloroplasts based on long-read RNA sequencing data

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The primary transcriptome of barley chloroplasts: numerous noncoding RNAs and the dominating role of the plastid-encoded RNA polymerase. https://doi.org/10.1105/tpc . https://doi.org/1 0.1371/journal.pone.0162868.. https://doi.org/10.1038/s x.. https://doi.org/10.1186/s y.. https://doi.org/1 0.1016/S . org/10.1016/j.mib . https://doi.org/10.1038/. https://doi.org/10.1093/bioinformatics/. https://doi.org/10.1101/. org/10.1093/bioinformatics/btv383.. https://doi.org/10.1016/j.tig . https://doi.org/

In silico prediction and expression profile analysis of small non-coding RNAs in Herbaspirillum seropedicae SmR1

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Structural characterization of the RNA chaperone Hfq from the nitrogen-fixing bacterium Herbaspirillum seropedicae SmR1.. Identification of putative noncoding RNA genes in the Burkholderia cenocepacia J2315 genome. The role of ribonucleases and sRNAs in the virulence of foodborne pathogens. The critical role of RNA processing and degradation in the control of gene expression. The crucial role of PNPase in the degradation of small RNAs that are not associated with Hfq.

Investigating the role of super-enhancer RNAs underlying embryonic stem cell differentiation

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Background: Super-enhancer RNAs (seRNAs) are a kind of noncoding RNA transcribed from super-enhancer regions. We found that the binding sites of master regulators of ESC differentiation, including NANOG, FOXA2, and MYC, were significantly observed in the loci of the stage-specific seRNAs.