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Selective sweep

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Breeding history and candidate genes responsible for black skin of Xichuan blackbone chicken

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Due to the limited information available, we performed in-depth whole-genome sequencing of 5 black-bone chickens to explore the population structure, genetic diversity, and history of this breed. 5 Identification of genomic regions in Xichuan black-bone chickens with strong selective sweep signals. a Selective sweep signals are located to the left and right of the vertical dashed lines (representing Pi ratio values >. 7 Histomorphological examination of Xichuan black-bone chickens with black (a

Selection signatures of Fuzhong Buffalo based on whole-genome sequences

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These results indicated that the nerve of FZ buffalo must have experienced se- lection, and these genes may act as the selective genes associated with the nerve of FZ buffalo.. Comparing 21 candidate genes detected by 4 methods with the published literature, some of these genes were found to be involved in production and growth traits.. The selective sweep con- taining PHLPP1 showed a reduction in nucleotide diver- sity in FZ buffalo (Fig.

Investigating the impact of reference assembly choice on genomic analyses in a cattle breed

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Chromosome 22 region in ARS-UCD1.2 from Mb and corresponding region on UOA_Angus_1 between Mb with highlighted two selective sweep region

Genome-wide analysis reveals molecular convergence underlying domestication in 7 bird and mammals

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A total of 281 selective sweeps were identified on au- tosomes, representing 2% of the genome.

A global analysis of CNVs in Chinese indigenous fine-wool sheep populations using whole-genome resequencing

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The 32 fine-wool sheep were divided into horned and polled groups, and selective sweep analysis of all the CNVRs was performed. 4 and Table S8 (Additional file 10), the horned and polled fine-wool sheep showed genetic differentiation in many of their chromosomes, with the most significant vari- ation on chromosome 10, in the RXFP2 and B3GLCT gene.

Insight into unique somitogenesis of yak (Bos grunniens) with one additional thoracic vertebra

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To explore the source of the generation of an extra vertebra and advantageous productive traits of Jinchuan yaks from an evolutionary perspective, selective sweep analysis was conducted between Jinchuan yaks and Qinghai-plateau yaks. The size of the regions under selective sweep in the Qinghai-plateau yak was less than half that of the Jinchuan yak.

Whole-genome resequencing provides insights into the population structure and domestication signatures of ducks in eastern China

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Using the top 5% of the F ST values and θπ ratio cutoffs based on sliding 40 kb windows for the Shaoxing ducks compared to wild mallards, we identified 497 candidate. 5 Identification of the genomic regions with strong selective sweep signals in domestic ducks. b Distribution of Tajima ’ s D values for the whole genome and selected genes of domestic ducks. c Box plots of Tajima ’ s D values for the whole genome and selected genes of domestic ducks.

Genome-wide genetic structure and selection signatures for color in 10 traditional Chinese yellow-feathered chicken breeds

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Use of multiple statistical approaches helps to manage inherent differences of individual tests and increase the reliability of the selective sweep detection [68]. The comparative genomic analysis approach involved ge- nomes of the YFCs against 24 chickens with contrasting non-yellow phenotypes (non-YFCs), i.e. In the LSBL, we computed LSBL(A;B,C.

Episodes of gene flow and selection during the evolutionary history of domesticated barley

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Each such position falls under a hard sweep in at least one of the groups, which indicates that such. Since the common domestication targets were compiled irrespectively of the sweep information, this approach circumvents the problem of potential false negatives in the sweep detection procedure. PC carried out the exome sequencing, the reconstruction of the population history, and the detection and analysis of selective sweeps and candidate target loci.

Gene expression profiles underlying aggressive behavior in the prefrontal cortex of cattle

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In the comparison with the high-frequency mutations and selective sweep studies in archaic humans, modern humans, and domesticated species (thirteen gene sets in total, compiled in [42], the only significant intersection was between the Lidia DEGs and genes with high fre- quency regulatory mutations in archaic compared to modern humans. 88 of the 1157 DEGs with known.

Genome-wide detection of signatures of selection in indicine and Brazilian locally adapted taurine cattle breeds using wholegenome re-sequencing data

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Putative sweep regions were revealed by assessing the top 1% of the empirical distribution generated by the DCMS statistics.. Conclusion: The current study reported putative sweep regions that can provide important insights to better understand the selective forces shaping the genome of the indicine and Brazilian locally adapted taurine cattle breeds. Full list of author information is available at the end of the article.

VẼ CÁNH QUẠT BẰNG LỆNH SWEEP BLEND

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Gv: Nguyễn Đình Thắng 2009 VẼ CÁNH QU T BẰNG LỆNH SWEEP BLEND Thực hiện các bước sau 1:Khởi động proe wild 4.0 File\New Type: chọn Part Sup_type : chọn Soild Nam : VE_CANH_QUAT Chọn OK \ OK 2: Ta chọn click nhấn chuột phải chọn Chọn mặt phẳng FRONT làm mặt phẳng vẽ phác Sử dụng lệnh LINE và ARC để vẽ biên dạng như sau [email protected] 1 Gv: Nguyễn Đình Thắng 2009 Nhấn nút để kết thúc vẽ phác Extrude với z= 210 Ta được kết quả sau 3: Ta chọn click nhấn chuột phải chọn Chọn mặt phẳng A

Single Pair Rate Selective G.SHDSL for CO and Customer Premises

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Single Pair Rate Selective G.SHDSL for CO and Customer Premises. Single-pair operation—uses only one pair with a max. user data rate of 2.304 Mbps. Nx64K rate selectable from 192 kbps to 2.304 Mbps. Automatic protection of TS0 and TS16 for fractional E1 use. V.35/V.36/RS-530/X.21. E1/FE1 and dataport simultaneous operation sharing the 2.304 Mbps bandwidth. ADC Telecommunications, Inc., P.O. Specifications published here are current as of the date of publication of this document.

Population structure, genetic diversity, and selective signature of Chaka sheep revealed by whole genome sequencing

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Our analyses provided new insights into the genetic diversity, population structure, and selective signature of the CKA breed compared to the other three breeds, which will improve the conservation programs for CKA sheep.. Three metrics were used to estimate the genetic diver- sities of the sheep breeds in the current study. The expected heterozygosity of CKA sheep was much higher than that of other breeds on average.

Mining ancient microbiomes using selective enrichment of damaged DNA molecules

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Conclusions: Our experiments show, that in addition to its use in enriching authentic endogenous DNA of organisms of interest, the selective enrichment of damaged DNA molecules can be a valuable tool in the discovery of ancient microbial taxa.. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material.

7 bước với selective color

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Thuật toán mặt phẳng quét ( sweep plane

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Chương 8: Mô hình hóa nâng cao

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Variable Section Sweep ...85. Helical Sweep ...87

Unravelling population structure heterogeneity within the genome of the malaria vector Anopheles gambiae

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Thus, visual interpretation of the t- SNE would not highlight this locus as a potential se- lective sweep. 7b) overlap in an area of the t-SNE that we henceforth refer to as the “Guinea-Bissau cluster” (Fig. Gene function enrichment in the t-SNE. A systematic analysis was performed to detect over- representation of gene functions in sub-regions of the t- SNE.

Mating precedes selective immune priming which is maintained throughout bumblebee queen diapause

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To address this, we explored molecular changes in the haemolymph of the ecologically important pollinator, the buff-tailed bumblebee Bombus terrestris. Using mass-spectrometry-based proteomics, we quantified changes in the pre-diapause queen. More specifically, mating pre-diapause was followed by an increase in the abundance of antimicrobial peptides, key effectors of the immune system. 2019 Open Access This article is distributed under the...