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Tissue specificity

Tìm thấy 11+ kết quả cho từ khóa "Tissue specificity"

Identification and characterization of male reproduction-related genes in pig (Sus scrofa) using transcriptome analysis

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Therefore, in order to further elucidate genes that were associated with male reproduction in pigs, TSGs were investigated using the distribution of the tissue specificity index τ.. Interestingly, data showed that testis contributed consid- erably to tissue specificity, and the number of tissue- specific genes in the testis was far higher than in others (such as brain, liver, heart and so on) (Fig. Characterizing unique or conserved during evolution TSGs in the pig.

A single factor dominates the behavior of rhythmic genes in mouse organs

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In addition to tissue specificity, rhythmically expressed genes also exhibit species-specific characteristics. A de- tailed comparison of 11 tissues in mouse and baboon suggested that only a small proportion of rhythmically expressed genes overlap in each tissue, and no signifi- cant correlation was observed between the numbers of rhythmic genes in the two species [19].

The landscape of lncRNAs in Cydia pomonella provides insights into their signatures and potential roles in transcriptional regulation

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To examine the tissue-specific expression patterns of lncRNAs across distinct tissues, we first calculated the specificity indices of mRNAs and lncRNAs for nine tis- sue samples based on the definition of the Jensen- Shannon (JS) divergence score. In addition, we calculated the JS scores of lncRNAs and mRNAs for the samples at different developmental stages. 3 Discrete expression pattern and tissue specificity of lncRNAs in C.

Genome-wide identification, and phylogenetic and expression profiling analyses, of XTH gene families in Brassica rapa L. and Brassica oleracea L.

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A total of 2 tandem genes (BraA.22b/e and BraA.14b/23b) showed different abun- dances, but the same trend with respect to patterns, whereas the two members of each of the other pairs of tandem genes showed differences in abundance and tissue specificity of expression.

Systematic analysis of the Capsicum ERF transcription factor family: Identification of regulatory factors involved in the regulation of species-specific metabolites

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Additionally, the members of two putative ‘pepper- specific groups’ (IXb and Xb) were barely expressed dur- ing all of the developmental pericarp and placenta stages, with the exception of CaERF67, CaERF73, CaERF127, and CaERF129, which exhibited low expres- sion in group IXb. the RPKM values were published instead, and when they were mapped to the Capsicum annuum genome (version 1.5), the expression of CaERFs clearly exhibited no tissue specificity (Fig. 5 Expression patterns of five CaERF TFs in

Transcriptomic analysis of dead end knockout testis reveals germ cell and gonadal somatic factors in Atlantic salmon

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In this study we have made available transcriptome data on genes expressed in the germ cell-free (GCF) Atlantic salmon testis tissue, which can also be compared to genes that are expressed in the same type of tissue with germ cells present. Validation of tissue specificity of the identified transcripts In this study we characterized in more detail two genes with a high expression (read counts) in gonadal somatic cells, gsdf and inha.

Genome-wide miRNA analysis and integrated network for flavonoid biosynthesis in Osmanthus fragrans

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To further address the tissue specificity of the small RNAs in O. fragrans, the comparative analysis of the small RNAs reads between flower and leaf tissue was per- formed. To identify the conserved miRNAs in O. The read numbers of the conserved miRNAs in miRNA families varied dramatic- ally from 1to Additional file 2: Table S2)..

A comprehensive RNA-Seq-based gene expression atlas of the summer squash (Cucurbita pepo) provides insights into fruit morphology and ripening mechanisms

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GO terms and KEGG pathway analysis were used to classify the functions of the specific genes for each tissue (Table S3). 3 a Distribution of the number of tissue-specific genes among tissues. b Heatmap of the number of upregulated genes [log2 (fold change. c Distribution of gene-tissue specificity measured as τ among putative housekeeping genes (HK), genes found to be differentially expressed between pairs of tissues (DEG), and the rest of the genes.

Genome-wide identification, evolution and expression analysis of the aspartic protease gene family during rapid growth of moso bamboo (Phyllostachys edulis) shoots

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Figure 8 shows that the expression patterns of the PhAP s also showed tissue specificity. All PhAP members of class I′ were nearly ab- sent from the 6.7 m moso bamboo (Fig. In contrast, class I’γ transcripts accumulated in the basal portion of 3 m moso bamboo (Fig. Class I’δ tran- scripts preferentially accumulated in the top portion of the 0.2 m and 1.5 m moso bamboo shoots and in the middle portion of the 0.2 m moso bamboo shoots (Fig..

Analysis of splice variants of the human protein disulfide isomerase (P4HB) gene

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We next performed the validation of P4HB splice variant expression in distinct cell types using PCR. expression levels and tissue specificity (above data), namely P4HB -02, P4HB -021 and P4HB -027.. 5 Analysis of RNA-seq data from a study [31] using VSMC (vascular smooth muscle cells) mimicking pathologic (stiff) and physiologic conditions (soft). a P4HB ( P4HB -001) gene expression.

Differential expression in leaves of Saccharum genotypes contrasting in biomass production provides evidence of genes involved in carbon partitioning

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Analysis of the diversity and tissue specificity of sucrose synthase genes in the long read transcriptome of sugarcane. Golgi-Mediated Synthesis and Secretion of Matrix Polysaccharides of the Primary Cell Wall of Higher Plants. Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L. Genome-wide analyses of miniature inverted-repeat transposable elements reveals new insights into the evolution of the triticum-Aegilops group.

Tissue-specific transposon-associated small RNAs in the gymnosperm tree, Norway spruce

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Thus, the tissue-specificity of 24-nt sRNA production is diverse in gymnosperms. While Pol IV and Pol V evolved in early land plants, the predominant use of 24-nt-siRNAs seems to have evolved more recently . This may explain the observed differences in 24-nt sRNA production among gymnosperm tissues..

Temporal changes in DNA methylation and RNA expression in a small song bird: Within- and between-tissue comparisons

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Indeed, changes in DNA methylation were found as a common factor for aging in mammals with a striking tissue-specificity for age related DNA methylation changes [8, 9].

Variation of microRNA expression in the human placenta driven by population identity and sex of the newborn

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Several co-expressed miRNA clusters stood out from the rest of the population-associated differences in terms of miRNA evolutionary age, tissue-specificity, and disease-association characteristics.

Transcriptome characterization of BPG axis and expression profiles of ovarian steroidogenesis-related genes in the Japanese sardine

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In both sexes, the transcripts with the highest tissue-specificity were found in the brain, and the highest overlap of transcripts between two tissues was found between brain and pituit- ary.

Unravelling population structure heterogeneity within the genome of the malaria vector Anopheles gambiae

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A comprehensive gene expression atlas of sex- and tissue-specificity in the malaria vector, Anopheles gambiae. Proteomics reveals novel components of the Anopheles gambiae eggshell. Genetic structure of a local population of the Anopheles gambiae complex in Burkina Faso. https://doi.org/10.1186/s . doi.org/10.1534/genetics . https://doi.org/10.1101/. Detecting recent positive selection in the human genome from haplotype structure. https://doi.org/10.1073/pnas.. https://doi.org/10.1111/j x..

Sexual dimorphism and sex-biased gene expression in an egg parasitoid species, Anastatus disparis

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Profiling sex-biased gene expression during parthenogenetic reproduction in Daphnia pulex. microevolutionary divergence of sex-biased gene expression. comprehensive gene expression atlas of sex- and tissue-specificity in the malaria vector, Anopheles gambiae. Hyperexpression of the X chromosome in both sexes results in extensive female bias of X-linked genes in the flour beetle. Patterns of synonymous codon usage in Drosophila melanogaster genes with sex-biased expression.

chuong 2. Nguyen lieu san xuat giay Tissue

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Chương 2.Nguyên liệu sản xuất giấy Tissue Nội dung chương 22.1. Lựa chọn nguyên liệu 3/18/21 CHƯƠNG 2. NGUYÊN LIỆU SẢN XUẤT GIẤY TISSUE 2 Nguyên liệu Nguyên liệu sản xuất giấy tissue? Bột giấy + (Phụ gia hoá chất) Bột giấy là gì?• Thành phần hóa học?• Tính chất bột?• Quá trình hình thành tờ giấy từ bột giấy3/18/21 2.1.

Phylogeny-wide conservation and change in developmental expression, cell-type specificity and functional domains of the transcriptional regulators of social amoebas

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The colour coding of the 6th, 7th and 8th square in each row respectively represent the developmental expression profile in the majority of species, the prestalk/prespore specificity when conserved between Ddis and Dpur slugs, the spore or stalk specificity when conserved between species, the cup and vegetative cell specificity in Ddis .

Pan-tissue transcriptome analysis of long noncoding RNAs in the American beaver Castor canadensis

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From the measured expression levels of the 187 lncRNAs across the 16 tissues, we (i) identified both tissue-specific and tissue-ubiquitous lncRNAs, (ii) correlated tissue expres- sion profiles of three beaver lncRNAs with the tissue ex- pression profiles of their orthologs and (iii) identified biological pathways and biological processes that beaver lncRNAs may regulate.