« Home « Kết quả tìm kiếm

Identification of novel hub genes associated with gastric cancer using integrated bioinformatics analysis


Tóm tắt Xem thử

- Identification of novel hub genes associated with gastric cancer using integrated bioinformatics analysis.
- Background: Gastric cancer (GC) is one of the most common solid malignant tumors worldwide with a high- recurrence-rate.
- To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/..
- The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data..
- https://doi.org/10.1186/s .
- Gastric cancer (GC), the fifth most frequently diagnosed cancer and the third leading cause of cancer-related death [1], has become a major global health challenge..
- Gastric cancer microarray data information.
- Overall, 183 patients with gastric cancer enrolled in this study..
- Information of DEGs’ protein experimental interactions and prediction was obtained by Search Tool for the Re- trieval of Interacting Genes (STRING, Version 11.0, http://www.string-db.org/) [10] with the parameters set to species = Homo sapiens, and PPI score ≥ 0.4 (medium confidence) [11].
- Subsequently, a specific PPI network of DEGs was constructed by cytoscape (version 3.7.2, http://www.cytoscape.org/) [12] based on the interac- tions retrieved from STRING.
- In the.
- In addition, the mo- lecular complex detection (MCODE) analysis (Version 3.7.2, http://apps.cytoscape.org/apps/MCODE) [13] in cytoscape was used to identify the significant modules of the PPI network with degree cut-off 2, max depth 100, k- core 2, and node score cutoff 0.2.
- Lu et al.
- Via R software, a total of 3224 DEGs (gastric cancer tissues vs.
- Identification of the selected genes.
- 4 PPI network of the DEGs in GC.
- GC: gastric cancer.
- Studies had shown that CCNB1 were associated with gastric cancer [36, 37].
- survival in gastric cancer patients [58].
- 10 Validation of 7 selected gene expression in gastric cancer samples was performed by qRT-PCR analysis.
- GC: Gastric cancer.
- The online version contains supplementary material available at https://doi..
- org/10.1186/s .
- Bray F, et al.
- https://doi.org/10.3322/caac.21332..
- https://doi.org/10.4251/wjgo.v4.i7.156..
- https://doi..
- org/10.1126/science.1235122..
- https://doi.org .
- https://doi.org/10.1038/nprot.2008.211..
- https://doi.org/10.1186/.
- Ritchie ME, et al.
- https://doi.org/10.1093/.
- https://doi.org/10.1093/nar/gkw937..
- org/10.1093/nar/gku1003..
- https://doi.org/1 0.1101/gr.1239303..
- Szasz AM, et al.
- https://doi.org/10.18632/oncotarget.10337..
- https://doi.org/10.3389/fimmu .
- High centromere protein-a (CENP-A) expression correlates with progression and prognosis in gastric Cancer.
- https://doi.org/10.2147/OTT..
- Van Cutsem E, et al.
- Gastric cancer.
- https://doi.org/10.1016/S .
- https://doi.org/10.3322/.
- https://doi.org/10.4161/cib.4.2.14270..
- doi.org/10.1083/jcb.201202112..
- https://doi.org/10.1091/mbc.e .
- org/10.1091/mbc.E17-08-0531..
- https://doi.org/10.1016/j.cell.2008.08..
- https://doi.org/10.1016/j..
- https://doi.org/10.1096/fj.201802186R..
- https://doi.org/10.1074/jbc.M702078200..
- https://doi.org/10.1083/jcb .
- https://doi.org/10.1016/B X..
- https://doi.org/10.1016/j.bbrc .
- Vongsangnak W, et al.
- doi.org/10.3892/or.2019.7225..
- https://doi.org/10.1016/j.prp .
- https://doi.org/10.1002/jcp.26816..
- org/10.1007/s .
- https://doi.org/10.1186/s x..
- https://doi.org September.26.5..
- https://doi.org/10.1 8632/oncotarget.9269..
- HnRNPR-CCNB1/CENPF axis contributes to gastric cancer proliferation and metastasis.
- https://doi.org/10.18632/aging.102254..
- https://doi.org/10.1038/labinvest.2013.124..
- https://doi.org/10.1002/hep.25834..
- https://doi.org/10.1016/j.lungcan .
- miR-30a-3p targets MAD2L1 and regulates proliferation of gastric Cancer cells.
- https://doi.org/10.2147/OTT.S222854..
- https://doi.org/10.1083/jcb.201102085..
- https://doi.org/10.1245/s .
- doi.org/10.1371/journal.pone.0091771..
- https://doi.org CA N-13-3440..
- https://doi.org/10.1002/.
- Clinical significance and biological roles of cyclins in gastric cancer.
- org/10.2147/OTT.S171716..
- Lee Y, et al.
- https://doi.org/10.1006/cyto.1999.0518..
- https://doi.org/10.101 6/j.canlet .
- https://doi.org/10.1038/sj.bjc.6690742..
- https://doi.org/10.1038/s .
- PTPRD-inactivation-induced CXCL8 promotes angiogenesis and metastasis in gastric cancer and is inhibited by metformin.
- https://doi.org/10.1136/gutjnl .
- https://doi.org/10.3389/fgene .
- Key elements involved in Epstein- Barr virus-associated gastric cancer and their network regulation.
- https://doi.org/10.1016/j.biopha .
- MTMR2 promotes invasion and metastasis of gastric cancer via inactivating IFNgamma/STAT1 signaling..
- https://doi.org/10.1186/s z..
- De Re V, et al.
- https://doi.org/10.4251/.
- Gastric Cancer: an evolving disease.
- https://doi.org/10.1007/s .
- doi.org .
- https://doi.org/10.1093/jb/mvr128..
- https://doi.org/10.1007/s z..
- doi.org/10.1016/j.biopha .
- https://doi.org/10.1159/.
- SPP1 rs4754 and its epistatic interactions with SPARC polymorphisms in gastric cancer susceptibility.
- https://doi.org/10.1016/j.gene.2017.09.

Xem thử không khả dụng, vui lòng xem tại trang nguồn
hoặc xem Tóm tắt