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Chủ đề : Differentially expressed genes


Có 20+ tài liệu thuộc chủ đề "Differentially expressed genes"

Transcriptional profile of oil palm pathogen, Ganoderma boninense, reveals activation of lignin degradation machinery and possible evasion of host immune response

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Ten percent of the G. Conclusions: This analysis offers an overview of the dynamic processes at play in G. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.. Full list of author information...

De novo transcriptome sequencing and anthocyanin metabolite analysis reveals leaf color of Acer pseudosieboldianum in autumn

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The change of leaf color is closely related to the synthesis and accumulation of anthocyanins in leaves. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use...

Comparative transcriptome analysis uncovers roles of hydrogen sulfide for alleviating cadmium toxicity in Tetrahymena thermophila

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In this study, the molecular roles of exogenously H 2 S application were explored by RNA sequencing under Cd stress in T.. Comparative transcriptome analysis showed that the expression levels of 9152 genes changed under Cd stress (4658 upregulated and 4494 downregulated). However, only 1359 genes were differentially expressed with NaHS treatment under Cd stress (1087 upregulated and 272 downregulated)....

Global mRNA and microRNA expression dynamics in response to anthracnose infection in sorghum

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Significant differences in transcriptomes of the susceptible and resistant genotypes were observed with dispersion distance and hierarchical cluster tree analyses. Of the total 33, 032 genes predicted in the sorghum genome, 19,593 were induced by C. The resistant line was marked by significant reprogramming of the transcriptome at 24 h post inoculation (hpi), and a decrease at 48 hpi, whereas...

Genomic differences between the new Fusarium oxysporum f. sp. apii (Foa) race 4 on celery, the less virulent Foa races 2 and 3, and the avirulent on celery f. sp. coriandrii

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Based on significantly increased expression of Foa race 4 genes in planta vs. PCR primers for diagnosis of either Foa race 2 or 4 and the Foci were identified.. Foa race 4 and Foa race 2, which are in different somatic compatibility groups, did not form CATs with each other.. Conclusions: There was no evidence that Foa race 2 was...

Transcriptome analysis identifies genes involved in the somatic embryogenesis of Eucalyptus

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Background: Eucalyptus, a highly diverse genus of the Myrtaceae family, is the most widely planted hardwood in the world due to its increasing importance for fiber and energy. Results: We compared the transcriptome profiles of the differentiated and dedifferentiated tissues of two Eucalyptus species – E. grandis x urophylla (low embryogenetic potential).. Compared to the differentiated tissues, we identified 9229...

Metabolomic and transcriptomic analyses of mutant yellow leaves provide insights into pigment synthesis and metabolism in Ginkgo biloba

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The results showed that the chlorophyll content of normal green leaves was significantly higher than that of mutant yellow leaves of ginkgo. A total of 283 substances in the metabolic profiles were finally detected, including 50 significantly differentially expressed metabolites (DEMs). We identified these DEMs and 1361 differentially expressed genes (DEGs), with 37, 4, 3 and 13 DEGs involved in...

Temporal salt stress-induced transcriptome alterations and regulatory mechanisms revealed by PacBio long-reads RNA sequencing in Gossypium hirsutum

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Temporal salt stress-induced transcriptome alterations and regulatory mechanisms. We studied a salt-tolerant upland cotton cultivar under temporal salt stress to unfold the salt tolerance molecular mechanisms. Biochemical response to salt stress (400 mM) was measured at 0 h, 3 h, 12 h, 24 h and 48 h post stress intervals and single- molecule long-read sequencing technology from Pacific Biosciences (PacBio)...

To bloom once or more times: The reblooming mechanisms of Iris germanica revealed by transcriptome profiling

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In the three comparisons (the floral initiation stage of spring flowering in once-bloomers (OB-T1) vs the floral initiation stage of spring flowering in rebloomers (RB-T1). As a result, the following four genes, PHYTOCHROME A (PHYA), GIGANTEA (GI), SHORT VEGETATIVE PERIOD (SVP) and AUXIN RESPONSE FACTOR (ARF), were considered to be involved in the second floral initiation of the rebloomers.. In...