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Transcriptome profiling

Tìm thấy 16+ kết quả cho từ khóa "Transcriptome profiling"

Comparative transcriptome profiling provides insights into plant salt tolerance in seashore paspalum (Paspalum vaginatum)

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Characterization of the global transcriptome using Illumina sequencing and novel microsatellite marker information in seashore paspalum. Transcriptome profiling of the salt-stress response in Triticum aestivum cv. Calcium-and salt-stress signaling in plants:. transporters in salt stress adaptation in Glycophytes. RNA-seq analysis of the response of the halophyte, Mesembryanthemum crystallinum (ice plant) to high salinity.

To bloom once or more times: The reblooming mechanisms of Iris germanica revealed by transcriptome profiling

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The construction of a hybrid population is an essential step for effectively detecting key genes of reblooming Transcriptome profiling is an effective way to detect DEGs from various sequencing groups, thereby provid- ing clues to the detection of key genes involved in the target characters. 5 GO pathway analysis for DEGs in the three comparisons (OB-T1 vs RB-T1, RB-T1 vs RB-T5, OB-T1 vs RB-T5) by using REVIGO.

3’Pool-seq: An optimized cost-efficient and scalable method of whole-transcriptome gene expression profiling

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While whole transcriptome profiling is a powerful technique that enables genome-wide interrogation of gene expres- sion, current practices are often limited to taking snap- shots of the transcriptome at a single condition due to the cost and time required for traditional RNA-seq ex- periments.

Global scale transcriptome analysis reveals differentially expressed genes involve in early somatic embryogenesis in Dimocarpus longan Lour

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Whole transcriptome profiling of maize during early somatic embryogenesis reveals altered expression of stress factors and embryogenesis-related genes. Transcriptome profiling and digital gene expression by deep sequencing in early somatic embryogenesis of endangered medicinal Eleutherococcus senticosus maxim. De novo comparative transcriptome analysis provides new insights into sucrose induced somatic embryogenesis in camphor tree (Cinnamomum camphora L.

Transcriptome analysis of the transdifferentiation of canine BMSCs into insulin producing cells

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However, surprisingly, besides our team, no other groups have focused on the timeline- based analysis of the whole transition process of canine BMSCs, and with transcriptome profiling, the data has been uploaded on SRA database (https://www.ncbi.nlm.. Combined with the sequencing data, we found that all of the transcriptome profiling data and GEO data pro- vided the same findings.

Comprehensive profiling of alternative splicing landscape during cold acclimation in tea plant

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Arabidopsis transcriptome profiling indicates that multiple regulatory pathways are activated during cold acclimation in addition to the CBF cold response pathway. A global survey of gene regulation during cold acclimation in Arabidopsis thaliana . Transcript and metabolite profiling during cold acclimation of Arabidopsis reveals an intricate relationship of cold-regulated gene expression with modifications in metabolite content. Molecular regulation of CBF signaling in cold acclimation.

Transcriptome analysis of the almond moth, Cadra cautella, female abdominal tissues and identification of reproduction control genes

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Molecular cloning, transcriptional regulation, and differential expression profiling of vitellogenin in two wing-morphs of the brown planthopper, Nilaparvata lugens Stål (Hemiptera: Delphacidae). Analysis of the vitellogenin gene of rice moth, Corcyra cephalonica Stainton. Deep sequencing of the zebrafish transcriptome response to mycobacterium infection. Multi- platform assessment of transcriptome profiling using RNA-seq in the ABRF next-generation sequencing study.

Liver transcriptome profiling and functional analysis of intrauterine growth restriction (IUGR) piglets reveals a genetic correction and sexual-dimorphic gene expression during postnatal development

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To the best of our knowledge, this study is the first comprehensive profiling of the liver transcriptome using postnatal IUGR piglets as a model, providing a reference for balancing growth compensation and preventing complications.. Moreover, the total protein is another important indicator of the metabolic capacity of the liver [22], which was significantly lower in the IUGR piglets. This finding indicates the presence of liver damage and dysfunction in IUGR piglets.

Transcriptomes analysis reveals novel insight into the molecular mechanisms of somatic embryogenesis in Hevea brasiliensis

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Whole transcriptome profiling of maize during early somatic embryogenesis reveals altered expression of stress factors and embryogenesis-related genes. RNA-seq screening of differentially- expressed genes during somatic embryogenesis in Fragaria x ananassa Duch. Decoding regulatory landscape of somatic embryogenesis reveals differential regulatory networks between japonica and indica rice subspecies.

Characterization and transcriptomic analysis of a novel yellow-green leaf wucai (Brassica campestris L.) germplasm

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Red and green dots represent up- and downregulated genes, respectively, and gray dots indicate transcripts that did not significantly change in the WY16 – 13 library compared to W16 – 13. transcriptome profiling of WY16–13 and W16–13 to obtain insights into leaf color variations at the transcrip- tional level and complex biological processes..

Comparative transcriptome analysis reveals ectopic delta-5 and delta-6 desaturases enhance protective gene expression upon Vibrio vulnificus challenge in Tilapia (Oreochromis niloticus)

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Results: Comparative transcriptome analysis was performed on RNA-sequence profiles obtained from wild-type and D56- transgenic tilapia at 0, 6 and 24 h post-infection with V. Conclusions: Transcriptome profiling and filtering for two-fold change variation showed that 3795 genes were upregulated and 1839 genes were downregulated in D56-transgenic tilapia.

Pan-tissue transcriptome analysis of long noncoding RNAs in the American beaver Castor canadensis

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Although this work focused on discovering beaver lncRNAs using multi-tissue transcriptome profiling, some novel aspects of the bioinformatics workflow that we used are worth noting. 7 Predicted minimum-free energy secondary structures of the putative beaver MEG3 lncRNA Ccan_OSU1_lncRNA_contig11359.1 (a) and the homologous sequence of human MEG3 (b).

Comparative evaluation for the globin gene depletion methods for mRNA sequencing using the whole blood-derived total RNAs

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For transcriptome profiling performs in whole blood, most kits for total RNA-Seq include both rRNA and glo- bin gene depletion steps before generating the first- strand cDNA. However, we observed significant globin and rRNA gene reads in some whole transcriptome ana- lyses of whole blood derived total RNA, suggesting that the depletion methods may be improved.

Full-length transcriptome sequences of Agropyron cristatum facilitate the prediction of putative genes for thousand-grain weight in a wheat-A. cristatum translocation line

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Food and Agriculture Organization of the United Nations. genome-wide transcriptome profiling of the medicinal plant Zanthoxylum planispinum using a single-molecule direct RNA sequencing approach

Bacillus velezensis LG37: Transcriptome profiling and functional verification of GlnK and MnrA in ammonia assimilation

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Moreover, the transcriptome and relative expression analysis were consistent with the transporter gene amtB and it is not involved in ammonia transport, even in the highest ammonia concentrations. Additionally, in the transcriptomic data, a novel ammonium transporter mnrA was expressed significantly in increased ammonia concentrations.

Transcriptomic analyses of Pinus koraiensis under different cold stresses

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Deep sequencing-based characterization of transcriptome of trifoliate orange (Poncirus trifoliata (L.) Raf.) in response to cold stress. characterization of the Anthurium transcriptome and analysis of its digital gene expression under cold stress. Transcriptome profiling of the cold response and signaling pathways in Lilium lancifolium.. Transcriptome profiling of low temperature-treated cassava apical shoots showed dynamic responses of tropical plant to cold stress.

Transcriptome profiling of immune response to Yersinia ruckeri in spleen of rainbow trout (Oncorhynchus mykiss)

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Transcriptome profiling reveals insight into distinct immune responses to Aeromonas salmonicida in gill of two rainbow trout strains.. Transcriptome analysis of rainbow trout infected with high and low virulence strains of infectious hematopoietic necrosis virus. Transcriptomic analysis of immunity in rainbow trout (Oncorhynchus mykiss) gills infected by Ichthyophthirius multifiliis.

Transcriptome profiling of human thymic CD4+ and CD8+ T cells compared to primary peripheral T cells

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Transcriptome profiling of human thymic CD4+ and CD8+ T cells compared to. Background: The thymus is a highly specialized organ of the immune system where T cell precursors develop and differentiate into self-tolerant CD4+ or CD8+ T cells. transcriptome profiles differ, between T cells still residing in the thymus and T cells in the periphery..

Transcriptome profiling analysis of sexbased differentially expressed mRNAs and lncRNAs in the brains of mature zebrafish (Danio rerio)

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Transcriptome profiling analysis of sex- based differentially expressed mRNAs and lncRNAs in the brains of mature zebrafish ( Danio rerio. However, systematic studies of the dimorphic patterns of gene expression in the brain of male and female zebrafish are lacking..

Transcriptome profiling revealed early vascular smooth muscle cell gene activation following focal ischemic stroke in female rats – comparisons with males

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Heatmap and dendrograms illustrating hierarchical clustering of the expression of the gene targets for the experimental groups, occluded MCAs (R), non-occluded MCAs (L) and control MCAs (C), based on outcomes from the Affymetrix whole-transcriptome expression profiling (microarray analysis). in the acute phase after ischemia-reperfusion and in par- ticular in the affected MCAs..