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Differentially expressed proteins

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Proteomic profiling reveals differentially expressed proteins associated with amylose accumulation during rice grain filling

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Identified differentially expressed proteins in Luliangyou 996 compared to Lingliangyou 268. Gene Ontology (GO) enrichment analysis of differentially expressed proteins. Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis of differentially expressed proteins.. The authors thank those who have been at the forefront of the fight against the 2019 novel coronavirus for allowing us to have peace of mind to concentrate on writing this manuscript..

Comparative milk proteome analysis of Kashmiri and Jersey cattle identifies differential expression of key proteins involved in immune system regulation and milk quality

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A total of 180 proteins were found to be differentially expressed between Kashmiri and Jersey cattle. Interestingly, 90 and 89 of the differentially expressed proteins were significantly upregulated in Kashmiri and Jersey cattle, respectively. Enzyme modulators were the major class of up-regulated proteins in both Kashmiri (20.51%) and Jersey cattle (14.28. of upregulated proteins in Kashmiri and Jersey cattle, respectively.

Proteome of larval metamorphosis induced by epinephrine in the Fujian oyster Crassostrea angulata

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In addition, 197 proteins were differentially expressed in the PL- MET and PL-eMET groups but not in the MET-eMET group. 2 Summary analysis of differentially expressed proteins in the PL-eSEN-einSEN groups. 3 The summary analysis of differentially expressed proteins in the PL-MET-eMET groups. Supplementary Table 7 shows the ex- tremely significant GO enrichment in the PL-PA and PA-MET groups.

Key metabolism pathways and regulatory mechanisms of high polysaccharide yielding in Hericium erinaceus

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(A) PCA of the expressed proteins. (C) Heatmap clustering of the significantly differentially expressed proteins.. The expressed proteins of the comparison group of HEC_vs_HEA and HEB_vs_HEA.. The significantly expressed proteins of the comparison group of HEB_vs_HEA.. The significantly expressed proteins of the comparison group of HEC_ vs_HEA.. KEGG pathway enrichment of the significantly upregulated proteins in HEB_vs_HEA..

Quantitative proteomic analyses reveal that energy metabolism and protein biosynthesis reinitiation are responsible for the initiation of bolting induced by high temperature in lettuce (Lactuca sativa L.)

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The fold-change of treatment/control at the transcript level using the RT-qPCR approach of 10 candidate genes involved in the identified differentially expressed proteins and the protein expression level by iTRAQ is shown in the figure. Definition of 10 candidate genes involved in the identified differentially expressed proteins: (1) PD1L, pyruvate decarboxylase 1 like.

Protein expression profiles in Meishan and Duroc sows during mid-gestation reveal differences affecting uterine capacity, endometrial receptivity, and the maternal– fetal Interface

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A two-tailed Fisher’s exact test was employed to test for enrichment of the differentially expressed proteins relative to all identified proteins.. of the total, genomic studies in sows at this stage of pregnancy have not been done. Comparisons between the Meishan and other breeds indicate that.

RNAseq and quantitative proteomic analysis of Dictyostelium knock-out cells lacking the core autophagy proteins ATG9 and/or ATG16

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We found 332 (279 up and 53 down up and 152 down) and 260 (114 up and 146 down) differen- tially expressed genes (DEGs) in ATG9‾, ATG16‾ and ATG9‾/16‾ strains, respectively. On the protein level we found 124 (83 up and 41 down up and 193 down) and 677 (347 up and 330 down) differentially expressed proteins (DEPs) in ATG9‾, ATG16‾ and ATG9‾/16‾ strains, respectively.

Transcriptomic and proteomic analyses of a new cytoplasmic male sterile line with a wild Gossypium bickii genetic background

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Forty-two TDFs and 11 differentially expressed proteins (DEPs) were annotated by analysis in the genomic databases of G. In addition, several TDFs from the transcriptome and several DEPs from the proteome were detected and confirmed by quantitative real-time PCR as being expressed in the buds of seven different periods of.

Transcriptomic and proteomic analyses of ovarian follicles reveal the role of VLDLR in chicken follicle selection

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In this study, a total of 5883 proteins were identified in the samples, and 5236 proteins were quantified. In the F6 follicles, the levels of 175 and 84 pro- teins were significantly increased and decreased, respect- ively, compared with those in the SY follicles. A detailed analysis of the top 10 up−/downregulated differentially expressed proteins (DEPs) is shown in Table 3. d KEGG signaling pathway enrichment analysis of DEGs. The pathways of the DEPs were constructed using KEGG software.

Candidate gene screening for lipid deposition using combined transcriptomic and proteomic data from Nanyang black pigs

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Expression analysis of the differentially expressed proteins identified in this investigation.. Analysis of the 99 differentially expressed proteins identified in this investigation.. Primers used for the qRT-PCR analysis of the DEGs. A list of the primers used to assess the differentially expressed genes composing of ACACA, GK, SQLE, FASN, SCD, DHCR24, ACSL4, CAT, PPARA, UCP3, PDK4, CEBPA, SLC25A20, and EGFR..

Transcriptomic, proteomic, and physiological comparative analyses of flooding mitigation of the damage induced by low-temperature stress in direct seeded early indica rice at the seedling stage

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Functional categories of the identified differentially expressed proteins (DEPs) between LT and CK.. Functional categories of the identified differentially expressed proteins (DEPs) between LTF and CK.. Functional categories of the identified differentially expressed proteins (DEPs) between LTF and LT.. Effects of low-temperature and low temperature flooding on agronomic characters..

Insights on bio-degumming of kenaf bast based on metagenomic and proteomics

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The list of the differentially expressed proteins/peptides in the degumming of the kenaf bast.. The funder had no direct role in the design and conduct of the study. collection, manage- ment, analysis and interpretation of the data. preparation, review, or approval of the manuscript. Effects of municipal sludge and treated waste water on biomass yield and fiber properties of kenaf (Hibiscus cannabinus L.

Proteomic responses to progressive dehydration stress in leaves of chickpea seedlings

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Thirty-four proteins were characterized as differentially expressed proteins (DEPs) between the two genotypes in response to dehydration stress (Fig. The T genotype generally had more up-regulated proteins than the S genotype at each time-point (Fig. the T genotype responded to dehydration by increasing up-regulated spot proteins (29 spots at 5 d), the S genotype had more down-regulated proteins (30 spots at 5 d).

Temporal proteomic profiling reveals insight into critical developmental processes and temperature-influenced physiological response differences in a bivalve mollusc

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Identification of differentially expressed proteins involved in the early larval development of the Pacific oyster Crassostrea gigas. https://doi.org/10.1016/j.. doi.org/10.1002/ece3.5885..

Proteome sequencing and analysis of Ophiocordyceps sinensis at different culture periods

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Based on the result of the annotations, metabolic pathways of active ingredients, amino acids and fatty acid were constructed, and the related enzymes were exhibited. sinensis zjut identified the differentially expressed proteins (DEPs) by growth in different culture periods, to find the important proteins involved in metabolic pathways of active ingredients.

Integrated proteomic and metabolomic analysis to study the effects of spaceflight on Candida albicans

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The red color represented proteins or metabolites that were up-regulated in spaceflight group. The blue color represented proteins or metabolites that were down-regulated in spaceflight group.. List of differentially expressed proteins between the spaceflight and control group.. List of differentially expressed metabolites between the spaceflight and control group..

Functional characterization and regulatory mechanism of wheat CPK34 kinase in response to drought stress

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Table 1 Identification of the differentially expressed proteins in leaves of BSMV-VIGS-TaCPK34-inoculated wheat plants. P30110.1 Glutathione S-transferase E-03 2.04E-02. EMS51097.1 Hypothetical protein TRIUR E-03 2.75E-02. Table 1 Identification of the differentially expressed proteins in leaves of BSMV-VIGS-TaCPK34-inoculated wheat plants (Continued). XP Uncharacterized protein LOC E-03 4.43E-02.

Global scale transcriptome analysis reveals differentially expressed genes involve in early somatic embryogenesis in Dimocarpus longan Lour

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The increase of IAA level may due to these differentially expressed genes during early SE. TIR1 mediated Aux/IAA proteins degradation and auxin-regulated transcription in the present of auxin [76], while TIR1 genes were down- regulated in EC and remained low during longan early SE.. AUX1, which mediated influx of IAA into cells, were mainly expressed in NEC, and down-regulated during early SE. 6 qRT-PCR verification of the selected molecular markers during longan SE.

Transcriptome profiling analysis of sexbased differentially expressed mRNAs and lncRNAs in the brains of mature zebrafish (Danio rerio)

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The STRING online software [45] was employed to con- struct the interaction network of the proteins encoded. by the differentially expressed genes. According to the FPKM values of the different expression of the lncRNAs and the mRNAs in the six samples, the Pear- son correlation coefficient between the lncRNAs and the mRNAs were calculated according to their FPKM values.. Differentially expressed mRNAs in the brains of male and female zebrafish..

Comprehensive analysis of differentially expressed circRNAs and ceRNA regulatory network in porcine skeletal muscle

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Comprehensive analysis of differentially expressed circRNAs and ceRNA regulatory network in porcine skeletal muscle. Background: Circular RNA (circRNA), a novel class of non-coding RNA, has a closed-loop structure with important functions in skeletal muscle growth. The purpose of this study was to investigate the role of differentially expressed circRNAs (DEcircRNAs), as well as the DEcircRNA-miRNA-mRNA regulatory network, at different stages of porcine skeletal muscle development.