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Draft genome

Tìm thấy 20+ kết quả cho từ khóa "Draft genome"

Novel genomic resources for shelled pteropods: A draft genome and target capture probes for Limacina bulimoides, tested for cross-species relevance

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Draft genome assembly. Scaffolding resulted in a slight improvement, with an in- crease in the N50 to 893 bp and a decrease in the L50 to 994,289 contigs. Therefore, a predicted 60.4% of the complete genome was sequenced.. Genome completeness based on the assembled draft genome was measured in BUSCO version and resulted in the detection of 60.2% of near universal orthologues that were either completely or partially present in the draft genome of L.

Draft genome of a biparental beetle species, Lethrus apterus

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The final assembly of the draft genome has been deposited at GenBank under the accession JAFFZR000000000. Annotation files (GFF3, amino acid and nucleotide sequences) were uploaded to Zenodo (https://zenodo.org/record/4540796). doi.org/10.1093/nar/gky379.. https://doi.org A.. https://doi.org/10.101 6/j.anbehav . doi.org/10.1093/bioinformatics/btq683.. https://doi.org/10.1186/gb-2012-13-6-r56.. https://doi.org/10.1093/.

The draft genome of horseshoe crab Tachypleus tridentatus reveals its evolutionary scenario and well-developed innate immunity

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The GC content of the genome is 32.03% (Table 1). A total of 24,222 protein-coding genes were conservatively predicted in the T. A total of 88.25% of the predicted genes were assigned and annotated by comparing to the NCBI non-redundant database, KEGG database [16] and InterPro database [17].. tridentatus, representing 0.99% of the genome size. Most of the identified repeat sequences were simple repeats (0.77. To estimate of repeat se- quences which are more difficult to detect in the draft.

Whole-genome sequencing of wild Siberian musk deer (Moschus moschiferus) provides insights into its genetic features

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The draft genome sequence of forest musk deer (Moschus berezovskii).. Mongolian Musk deer ( Moschus moschiferus Linnaeus , 1758).. The draft genome sequence of forest musk deer ( Moschus berezovskii. The reproductive performance of female forest musk deer (Moschus berezovskii) in captivity.. On the structure and affinities of the Musk-Deer (Moschus moschifer- us Linn.

Modification of the genome topology network and its application to the comparison of group B Streptococcus genomes

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The ‘ average length (KB) in a genome ’ represents the average length of the conserved genomic regions in each genome. Phylogenetic tree of the complete genome group based on the orthoMCL results. Phylogenetic tree of the complete and draft genome groups on the basis of the COG result. Phylogenetic tree of the complete genome group based on. ZY conceived of the study, participated in its design and coordination, and help to draft the manuscript.

A genome-wide screening for RNAi pathway proteins in Acari

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Genome sequencing of the Phytoseiid predatory mite Metaseiulus occidentalis reveals completely atomized hox genes and superdynamic intron evolution.. Draft genome of the honey bee ectoparasitic mite, Tropilaelaps mercedesae, is shaped by the parasitic life history. Draft genome of the scabies mite. Allergen homologs in the Euroglyphus maynei draft genome

Genome of the four-finger threadfin Eleutheronema tetradactylum (Perciforms: Polynemidae)

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A draft genome assembly of the Chinese sillago (Sillago sinica), the first reference genome for Sillaginidae fishes. Genome sequence and genetic diversity of the common carp. Chromosomal-level reference genome of the incense tree Aquilaria sinensis. repeatmasker.org. LTR_FINDER: an efficient tool for the prediction of full-length LTR retrotransposons. https://doi.org/10.1093/molbev/mst010.. https://doi.org/10.1093/molbev/msy096.

Long-read sequencing and de novo genome assembly of marine medaka (Oryzias melastigma)

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The genome of the extremophile crucifer Thellungiella parvula. https://doi.org/10.1038/ng.889.. https://doi.org/10.1126/science.1197005.. https://doi.org/10.1186/gb . https://doi.org/10.1038/nmeth.3865.. A draft genome assembly of the solar-powered sea slug Elysia chlorotica. https://doi.org/10.1038/sdata.2019.22..

Reconstruction of ancient homeobox gene linkages inferred from a new high-quality assembly of the Hong Kong oyster (Magallana hongkongensis) genome

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A draft genome assembly of the solar-powered sea slug Elysia chlorotica. Calcino AD, de Oliveira AL, Simakov O, et al. Camacho C, Coulouris G, Avagyan V, et al. Chénais B, Caruso A, Hiard S, et al. Chan C, Jayasekera S, Kao B, et al. Chipman AD, Ferrier DEK, Brena C, et al. Choo LQ, Bal TMP, Choquet M, et al. Du X, Fan G, Jiao Y, et al. da Fonseca RR, Couto A, Machado AM, et al. A draft genome sequence of the elusive giant squid, Architeuthis dux.

Construction of a high-density genetic map and mapping of growth related QTLs in the grass carp (Ctenopharyngodon idellus)

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A draft genome for grass carp has already been published in 2015. There no growth related QTLs of grass carp have been published yet.. Even the growth trait is one of the focuses in grass carp culture.. The total length of the consensus map is 5553.43 cM with the average marker interval of 1.92 cM. The map has a good collinearity with both the grass carp draft genome and the zebrafish genome, and it assembled 89.91% of the draft genome to a chromosomal level.

A chromosome-scale assembly of the smallest Dothideomycete genome reveals a unique genome compaction mechanism in filamentous fungi

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The size of the final assembled nuclear-genome was 18.99 Mb, with a N50 length of 3.68 Mb, which was composed of five chromosomes. fructicola genome and syntenic blocks of the five chromosomes. Dot plot illustrating the comparative analysis of the chromosome level assembly genome and previous draft genome [12]. fructicola is similar to that of the basidiomycete Ustilago maydis (19.66 Mb) [17], but P. Of the 8072 gene models for P.

LRScaf: Improving draft genomes using long noisy reads

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A recent study showed that the NA12878 genome was assembled with an NG50 value of about 6.5 Mbp using pure 35-fold Nanopore data [6]. LRScaf yields a relatively low number of misassemblies in most of the studied cases. The majority of the draft assemblies constructed using NGS data are fragmented and influ- enced by repeats. sapiens using PacBio long reads. 93.5 kbp – 488.0 kbp . 390.5 Mbp. 248.2 kbp. 187.8 kbp. OPERA-LG (SOAP) 346.1 Mbp. 143.6 kbp 98.5 kbp 1.1 Mbp .

Genome of the webworm Hyphantria cunea unveils genetic adaptations supporting its rapid invasion and spread

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A draft sequence for the genome of the domesticated silkworm (Bombyx mori). Multifaceted biological insights from a draft genome sequence of the tobacco hornworm moth, Manduca sexta. Analysis of the antennal transcriptome and insights into olfactory genes in Hyphantria cunea (Drury). Shotgun proteomic analysis of the Bombyx mori anterior silk gland: an insight into the biosynthetic fiber spinning process.

The community-curated Pristionchus pacificus genome facilitates automated gene annotation improvement in related nematodes

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The draft genome of the parasitic nematode Trichinella spiralis.. https://doi.org/10.1038/ng.769.. https://doi.org/10.1126/science.aao0827.. https://doi.org/10.1093/bioinformatics/btq706.

Comparative genomics of four strains of the edible brown alga, Cladosiphon okamuranus

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Paired-end genomic DNA reads that were not used in each of the strain-genome assembly processes were collected with kneaddata v0.6.1 (https://bitbucket.org/. Cladosiphon okamuranus . A draft genome of the brown alga, Cladosiphon okamuranus, S-strain: a platform for future studies of ‘ mozuku ’ biology. Draft genome of the brown alga, Nemacystus decipiens, Onna-1 strain:.

A first insight into the genome of Prototheca wickerhamii, a major causative agent of human protothecosis

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Extensive error in the number of genes inferred from draft genome assemblies. A lack of parasitic reduction in the obligate parasitic green alga Helicosporidium. Biosynthesis of selenocysteine, the 21st amino acid in the genetic code, and a novel pathway for cysteine biosynthesis. Computational identification of the selenocysteine tRNA (tRNASec) in genomes. The structure and retrotransposition mechanism of LTR-retrotransposons in the asexual yeast Candida albicans.

The core genome multi-locus sequence typing of Mycoplasma anserisalpingitidis

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With the advance of whole genome sequencing technologies, new methods are available for the researchers. The core genome contains a high percentage of the coding DNA sequence (CDS) set of the studied strains. The cgMLST schemas are powerful genotyping tools allowing for the investigation of potential epidemics, and precise and reliable classification of the strains. Draft genomes were assembled with the SPAdes software and analysed with the online available chewBBACA program.

Enhancement of de novo sequencing, assembly and annotation of the Mongolian gerbil genome with transcriptome sequencing and assembly from several different tissues

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These data provide a draft genome sequence to facilitate the continued use of the Mongolian gerbil as a model organ- ism and to help broaden the genetic rodent models available to researchers.. Insert library sequencing generated a total of 322.13 Gb in raw data, from which a total of 287.4 Gb of ‘clean’. Genome assembly. The gerbil genome was estimated to be approximately 2.48 Gbp using a k-mer-based approach.

Genome-wide identification, phylogeny, and expression analysis of the SBP-box gene family in Euphorbiaceae

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Genome-wide identification and analysis of the SBP-box family genes in apple (Malus x domestica Borkh.. Genome-wide analysis of the SPL family transcription factors and their responses to abiotic stresses in maize. Draft genome sequence of the oilseed species Ricinus communis. Genome-wide identification and evolutionary analysis of the SBP-box gene family in castor bean. A genome triplication associated with early diversification of the core eudicots.

Genomic insights into mite phylogeny, fitness, development, and reproduction

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Gene-enriched draft genome of the cattle tick Rhipicephalus microplus: assembly by the hybrid Pacific Biosciences/Illumina approach enabled analysis of the highly repetitive genome. Genomic survey of the ectoparasitic mite Varroa destructor, a major pest of the honey bee Apis mellifera. A model species for agricultural pest genomics: the genome of the Colorado potato beetle, Leptinotarsa decemlineata (Coleoptera: Chrysomelidae).