« Home « Kết quả tìm kiếm

Populus trichocarpa

Tìm thấy 19+ kết quả cho từ khóa "Populus trichocarpa"

Exome resequencing and GWAS for growth, ecophysiology, and chemical and metabolomic composition of wood of Populus trichocarpa

tailieu.vn

Analysis of the genetic variation in growth, ecophysiology, and chemical and metabolomic composition of wood of Populus trichocarpa provenances. Evans LM, Slavov GT, Rodgers-Melnick E, Martin J, Ranjan P, Muchero W, Brunner AM, Schackwitz W, Gunter L, Chen J-G, et al. Porth I, Klap š te J, Skyba O, Hannemann J, McKown AD, Guy RD, DiFazio SP, Muchero W, Ranjan P, Tuskan GA, et al.

Alternative Polyadenylation in response to temperature stress contributes to gene regulation in Populus trichocarpa

tailieu.vn

Alternative Polyadenylation in response to temperature stress contributes to gene regulation in Populus trichocarpa. Results: Here, we performed a genome-wide profiling of polyadenylation sites under heat and cold treatments in Populus trichocarpa . Through a comprehensive analysis of polyA tail sequences, we identified 25,919 polyA-site clusters (PACs), and revealed 3429 and 3139 genes shifted polyA sites under heat and cold stresses respectively.

The DUB family in Populus: identification, characterization, evolution and expression patterns

tailieu.vn

To identify the Populus DUB family members, we used the amino acid sequence of the Arabidopsis DUB family as the query sequences for a Blast search of the Populus trichocarpa genome database (version 3.0. Th poplar DUB family members were further confirmed by analysis of the conserved do- mains using the EMBL-EBI Pfam database (http://pfam..

DNA methylation and its effects on gene expression during primary to secondary growth in poplar stems

tailieu.vn

Site-dependent differences in DNA methylation and their impact on plant establishment and phosphorus nutrition in Populus trichocarpa. night DNA methylation differences in Populus nigra. Establishing, maintaining and modifying DNA methylation patterns in plants and animals. Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning. The role of DNA methylation in Xylogenesis in different tissues of poplar.

Genome-wide identification of ATP binding cassette (ABC) transporter and heavy metal associated (HMA) gene families in flax (Linum usitatissimum L.)

tailieu.vn

Unrooted phylogenetic trees were constructed using the protein sequences for each of the eight ABC trans- porter and four HMA gene subfamilies of Linum usita- tissimum , Arabidopsis thaliana , Populus trichocarpa , Vitis vinifera , and Brachypodium distachyon (Fig. Based on the phylogenetic relationships of flax and other species, the ABC transporter genes were divided into eight subfamilies: ABCA-ABCG and ABCI (Fig.

Genome-wide identification, molecular evolution, and expression analysis provide new insights into the APETALA2/ethylene responsive factor (AP2/ERF) superfamily in Dimocarpus longan Lour

tailieu.vn

Thus, genome-wide identification of the AP2/ERF superfamily members have been conducted in many plants, such as Arabidopsis thaliana [1], soybean (Glycine max) [25], barley (Hordeum vulgare) [26], grape (Vitis vinifera) [27], poplar (Populus trichocarpa) [28], Chinese cabbage (Brassica rapa ssp. The longan genome was sequenced in our laboratory, which provides a great opportunity for the genome-wide study of the AP2/ERF superfamily [33].

Genome-wide analysis of SET-domain group histone methyltransferases in apple reveals their role in development and stress responses

tailieu.vn

SDG protein sequences from Arabidopsis thaliana, Gly- cine max, Populus trichocarpa, and Citrus sinensis were used to characterize the phylogenetic relationships of MdSDGs in apple (Fig. 1 Chromosomal localization of SDGs in the apple genome. The numbers of MdSDGs assigned to each chromosome are shown in the histogram. The domain organization of MdSDGs within the same class was relatively conserved (Fig.

Genome-wide characterization of the SPL gene family involved in the age development of Jatropha curcas

tailieu.vn

Molecular characterization of the SPL gene family in Populus trichocarpa. Functional evolution in the plant SQUAMOSA- PROMOTER BINDING PROTEIN-LIKE (SPL) gene family. with shoot maturation in the reproductive phase. Novel positive regulatory role for the SPL6 transcription factor in the N TIR-NB-LRR receptor-mediated plant innate immunity. Genome-wide identification and characterization of SQUAMOSA-promoter-binding protein (SBP) genes involved in the flowering development of Citrus Clementina..

Genome-wide identification and functional analysis of the TIFY gene family in the response to multiple stresses in Brassica napus L.

tailieu.vn

Effector MiSSP7 of the mutualistic fungus Laccaria bicolor stabilizes the Populus JAZ6 protein and represses jasmonic acid (JA) responsive genes. evolution in the post-Neolithic Brassica napus oilseed genome. Identification and analysis of the TIFY gene family in Gossypium raimondii. Genome-wide identification and analysis of the Populus trichocarpa TIFY gene family. Identification and characterization of TIFY family genes in Brachypodium distachyon.

Gene expression predictions and networks in natural populations supports the omnigenic theory

tailieu.vn

We mapped the reads on the Populus trichocarpa v3.0 transcriptome with bowtie2 v and obtained the read counts for each of the 41,335 transcripts by homemade scripts (a median of 17 millions of reads were mapped per sample, with a minimum of 6 and a maximum of 42 million). We started cleaning our raw count data by removing the transcripts without at least 1 count in 10% of the indi- viduals.

Oak displays common local but specific distant gene regulation responses to different mycorrhizal fungi

tailieu.vn

The other EMF, Laccaria bicolor S238N, a member of the Agari- cales, has been widely investigated in EM associations with the model tree species Populus trichocarpa [32].. Herrmann and Buscot [40] and Frettinger et al. Transcriptomes of the saplings were analysed by Illumina sequencing, reads were aligned against the re- cently sequenced oak genome [12], and 12 of the differ- entially expressed transcripts were validated by qRT- PCR.

Genome-wide identification of the histone acetyltransferase gene family in Triticum aestivum

tailieu.vn

Genome-wide identification and analysis of the Populus trichocarpa TIFY gene family. Expansion of the receptor-like kinase/Pelle gene family and receptor-like proteins in Arabidopsis. Genome-wide analysis of the YABBY transcription factor family in pineapple and functional identification of AcYABBY4 involvement in salt stress. The roles of histone acetylation in seed performance and plant development.

Analysis of MADS-box genes revealed modified flowering gene network and diurnal expression in pineapple

tailieu.vn

Genome-wide analysis of the MADS-box gene family in Populus trichocarpa

Whole-genome resequencing using nextgeneration and Nanopore sequencing for molecular characterization of T-DNA integration in transgenic poplar 741

tailieu.vn

After performing quality-control checks, a total of 52.3 million clean reads for transgenic poplar 741 line Pb29 were obtained from the raw reads, corre- sponding to more than 30× coverage of the Populus trichocarpa reference genome (https://www.ncbi.nlm.. More than 92% of the sequen- cing data had Phred-like quality scores ≥ 30, indicat- ing that the data were high quality (Table S1).

Genome-wide identification and expression analysis of AP2/ERF transcription factors in sugarcane (Saccharum spontaneum L.)

tailieu.vn

Genome-wide analysis of the AP2/ERF gene family in Populus trichocarpa. Discovery and expression profile analysis of AP2/ERF family genes from Triticum aestivum. Functions and application of the AP2/ERF transcription factor family in crop improvement. Overexpression of an AP2/ERF type transcription factor OsEREBP1 confers biotic and abiotic stress tolerance in rice.

Genome-wide identification and transcriptome profiling reveal that E3 ubiquitin ligase genes relevant to ethylene, auxin and abscisic acid are differentially expressed in the fruits of melting flesh and stony hard peach varieties

tailieu.vn

Genome-wide classification, identification and expression profile of the C3HC4-type Ring finger gene family in poplar ( Populus trichocarpa. Genome-wide analysis of the Ring finger gene family in apple. Identification and expression profiling of the BTB domain-containing protein gene family in the silkworm, bombyx mori. The F-box subunit of the SCF E3 complex is encoded by a diverse superfamily of genes in Arabidopsis .

Genome-wide analysis of AP2/ERF superfamily in lotus (Nelumbo nucifera) and the association between NnADAP and rhizome morphology

tailieu.vn

Genome-wide analysis of the AP2/ERF gene family in Populus trichocarpa. Genome-wide investigation of the AP2/ERF gene family in tartary buckwheat (Fagopyum Tataricum). Orchestration of the floral transition and floral development in Arabidopsis by the bifunctional transcription factor APETALA2. Overexpression of the Arabidopsis CBF3 transcriptional activator mimics multiple biochemical changes associated with cold acclimation.

Genome-wide investigation of the heat shock transcription factor (Hsf) gene family in Tartary buckwheat (Fagopyrum tataricum)

tailieu.vn

Genome-wide analysis of the heat shock transcription factors in Populus trichocarpa and Medicago truncatula. Evaluation of flavonoid contents and antioxidant capacity of the aerial parts of common and tartary buckwheat plants. Genome-wide investigation of the Auxin response factor gene family in Tartary buckwheat (Fagopyrum tataricum). Evolution and expression analysis of the grape (Vitis vinifera L.) WRKY gene family.

Gene expression profiling identifies pathways involved in seed maturation of Jatropha curcas

tailieu.vn

Twenty- three of the identified core genes have been selected and aligned to homologous sequences from Jatropha curcas, Hevea brasiliensis, Manihot esculenta, Ricinus commu- nis, Populus trichocarpa and Vitis vinifera using clustalw [96]. Additional informa- tion was added to the annotation database from an InterProScan v5RC6 analysis of the sequences [99]. For protein-based similarity search, a protein sequence data- base of the reads was set up.

Tổng quan về tiềm năng ứng dụng của yếu tố phiên mã NAC trong cải thiện đặc tính chống chịu ở cây trồng

tailieu.vn

Expression Analysis of the NAC Transcription Factor Family of Populus in Response to Salt Stress. A NAC transcription factor represses putrescine biosynthesis and affects drought tolerance. NAC transcription factors in plant immunity.. Genome-wide identification and comprehensive analysis of the NAC transcription factor family in Sesamum indicum