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Abiotic stress

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Transcriptome-wide identification of optimal reference genes for expression analysis of Pyropia yezoensis responses to abiotic stress

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Transcriptome-wide identification of optimal reference genes for expression analysis of Pyropia yezoensis responses to abiotic stress. To accurately quantify gene expression, selection and validation of stable reference genes is required.. Conclusion: We have identified appropriate reference genes for RT-qPCR in P. Keywords: Abiotic stress, Pyropia yezoensis , Reference genes.

Genome-wide identification and transcript profiles of walnut heat stress transcription factor involved in abiotic stress

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Regulation of HSF1 function in the heat stress response, implications in aging and disease. Molecular mechanisms of the plant heat stress response. Progress on the function of heat shock transcription factors in plant abiotic stress tolerance. Ca 2+ and AtCaM 3 are involved in the expression of heat shock protein gene in Arabidopsis. The heat shock response in moss plants is regulated by specific calcium-permeable channels in the plasma membrane.

Maize transposable elements contribute to long non-coding RNAs that are regulatory hubs for abiotic stress response

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Most of the 16 modules were associated with a single stress and developmental stage, but some were cor- related with two or more stresses or stages (Fig. 1e-49) and contained 147 lncRNAs and 65 TE-lncRNAs. 3 A visual representation of the 16 modules that were significantly correlated with abiotic stress responses.

Genome-wide identification and expression profile under abiotic stress of the barley non-specific lipid transfer protein gene family and its Qingke Orthologues

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The seven Type 1 HvLTP and HtLTP genes had significant responses in the leaves under cold, drought and salt stress, but no or low responses in the roots, which was consistent with the low expression in the root in the IPK database (Fig. After abiotic stress was removed, the change trend of the type 1 gene was also different. The relative expression levels of the HvLTP1 and HtLTP1 genes in plants grown under different abiotic stresses measured by qRT – PCR.

Genome-wide analyses of genes encoding FK506-binding proteins reveal their involvement in abiotic stress responses in apple

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Genome-wide analysis and expression profiling of the DREB transcription factor gene family in Malus under abiotic stress. Genome wide analysis of the apple MYB transcription factor family allows the identification of MdoMYB121 gene conferring abiotic stress tolerance in plants. Bioinformatics and expression analysis of the WRKY gene family in apple. High- molecular-weight FK506-binding proteins are components of heat-shock protein 90 heterocomplexes in wheat germ lysate

Genome-wide analysis of wheat DNAbinding with one finger (Dof) transcription factor genes: Evolutionary characteristics and diverse abiotic stress responses

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The aim of this study was to investigate the evolutionary and functional characteristics associated with plant growth and abiotic stress responses by genome-wide analysis of the wheat Dof transcription factor gene family..

Genome-wide identification and abiotic stress-responsive pattern of heat shock transcription factor family in Triticum aestivum L.

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In addition, allopolyploidy is proved to increase abiotic stress tolerance in plants [47, 48], and the larger number of members of the Hsf family may contribute to the higher abiotic stress tolerance.. Classification and phylogenetic analysis of the TaHsf proteins. The TaHsfs were thus named based on the corresponding subclass name of the orthologous gene in model plants..

Genome-wide analysis of the serine carboxypeptidase-like protein family in Triticum aestivum reveals TaSCPL184-6D is involved in abiotic stress response

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Genome-wide analysis of the serine carboxypeptidase-like protein family in Triticum aestivum reveals TaSCPL184-6D is involved in abiotic stress response. Gene duplication analysis showed that ~ 10.5% and ~ 64.8% of the TaSCPL genes are derived from tandem and segmental duplication events, respectively. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/..

Genome wide survey, evolution and expression analysis of PHD finger genes reveal their diverse roles during the development and abiotic stress responses in Brassica rapa L.

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genes were clustered to- gether with those previously characterized as stress- related, while 63 others were clustered together with those previously reported as development-related. rapa PHD finger genes were responsive to the two abiotic stress treatments.. 5 Expression profile of 140 Brassica rapa PHD finger genes in different tissues revealed by clustering analysis of RNA-Seq data.

A comprehensive analysis of cotton VQ gene superfamily reveals their potential and extensive roles in regulating cotton abiotic stress

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Our study could serve as a foundation for future exploration of the specific functions of Gossypium VQs in the abiotic stress responses and the interactions with WRKYs or microRNAs.. Identification and classification of VQs in plants. motif-containing sequences were confirmed in the NCBI Conserved Domain Database (https://www.ncbi.nlm.nih..

Genome-wide study of pineapple (Ananas comosus L.) bHLH transcription factors indicates that cryptochrome-interacting bHLH2 (AcCIB2) participates in flowering time regulation and abiotic stress response

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Cryptochrome-related abiotic stress responses in plants. From the cover: a role for Arabidopsis cryptochromes and COP1 in the regulation of stomatal opening.. 20 years of the SMART protein domain annotation resource

Genome-wide identification of the MADSbox transcription factor family in autotetraploid cultivated alfalfa (Medicago sativa L.) and expression analysis under abiotic stress

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In this study, the expression pat- terns of 104 MsMADS-box genes under multiple abiotic stresses were determined in previous RNA-Seq data.. Most MsMADS-box genes showed different responses to abiotic stress at the transcriptional level. The expression levels of eight MsMADS-box genes under cold, drought, and salt stresses and ABA treat- ment were studied by qRT-PCR. A total of 120 MsMADS-box genes were extensively identified via genome-wide screening.

Genome-wide identification, characterization, and expression analysis of tea plant autophagy-related genes (CsARGs) demonstrates that they play diverse roles during development and under abiotic stress

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Under various abiotic stress conditions, most CsARGs were induced at different treatment time points, which indicated that CsARGs play central roles in the response to abiotic stress in tea plants. In addition, 10 CsARGs were more highly expressed in the cold-resistant cultivar than in the cold-susceptible cultivar during CA periods;.

Genome-wide identification and functional characterization of the Camelina sativa WRKY gene family in response to abiotic stress

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Expression of the MYB transcription factor gene BplMYB46 affects abiotic stress tolerance and secondary cell wall deposition in Betula platyphylla. Ji C, et al. Tang J, et al. Chen J, et al. Raineri J, et al. The rice transcription factor OsWRKY47 is a positive regulator of the response to water deficit stress. Jiang Y, et al. Xu H, et al. Song H, et al. Zhu Y, et al. Zhao J, et al. Evolutionary and expression analyses of the apple basic leucine zipper transcription factor family. Guo C, et al.

Comprehensive genomic analysis of the DUF4228 gene family in land plants and expression profiling of ATDUF4228 under abiotic stresses

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Comprehensive genomic analysis of the DUF4228 gene family in land plants and expression profiling of ATDUF4228 under abiotic stresses. Some cis-elements responding to abiotic stress and phytohormones were identified in the upstream sequences of the ATDUF4228 genes.

Genome-wide characterization and evolutionary analysis of heat shock transcription factors (HSFs) to reveal their potential role under abiotic stresses in radish (Raphanus sativus L.)

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Taken together, several RsHSF genes were differentially expressed upon abiotic stresses including heat, salt or heavy metal stress, and these results indicate that they might be involved in the plant response to abiotic stresses.. In this study, RsHSF genes exhibited tissue-specific expression patterns. Further characterization of these differentially expressed RsHSF genes would facilitate investigating the regulatory networks of abiotic stress responses in radish..

Genome-wide identification of lipoxygenase gene family in cotton and functional characterization in response to abiotic stresses

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Based on the integration of promoter analysis and differ- ential expression patterns under different abiotic stresses we hypothesized that GhLOX genes are potentially im- portant in the regulation of stress responses. 5 Expression profile of GhLOX genes in response to different abiotic stresses. b The relative expression of selected GhLOX genes under 200 mM salt stress was determined by qRT-PCR.

Genome-wide identification and expression profiling of trihelix gene family under abiotic stresses in wheat

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MA plots of the differential expression of wheat trihelix genes under cold stress.. MA plots of the differential expression of wheat trihelix genes under drought stress for 1 h. MA plots of the differential expression of wheat trihelix genes under drought stress for 6 h.. Comprehensive analysis of trihelix genes and their expression under biotic and abiotic stresses in Populus trichocarpa. A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome.

Genome-wide identification and expression analysis of the bHLH transcription factor family and its response to abiotic stress in sorghum [Sorghum bicolor (L.) Moench]

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Genome-wide identification and expression analysis of the bHLH transcription factor family and its response to abiotic stress in sorghum [Sorghum bicolor (L.) Moench]. However, no systemic analysis of the bHLH transcription factor family has yet been reported in Sorghum bicolor.. Results: We conducted the first genome-wide analysis of the bHLH transcription factor family of Sorghum bicolor and identified 174 SbbHLH genes.

Genome-wide characterization and expression analysis of geranylgeranyl diphosphate synthase genes in cotton (Gossypium spp.) in plant development and abiotic stresses

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It was observed that most of the GhGGPPS genes were induced by different abiotic stresses, such as GhGGPPS1 and GhGGPPS9 were up- regulated under 2 h cold, GhGGPPS3 was up-regulated with 4 h heat, GhGGPPS8 was up-regulated under 1 and 2 h NaCl, and GhGGPPS15 was up-regulated by 6 h PEG treatment, indicating that GhGGPPS genes might posi- tively participate in abiotic stress responses.