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Subcellular localization

Tìm thấy 20+ kết quả cho từ khóa "Subcellular localization"

Benchmarking subcellular localization and variant tolerance predictors on membrane proteins

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BUSCA: an integrative web server to predict subcellular localization of proteins. Prediction of protein subcellular localization. DeepLoc: prediction of protein subcellular localization using deep learning.. SubCons: a new ensemble method for improved human subcellular localization predictions.. a pipeline for the annotation of eukaryotic membrane proteins.

Identify RNA-associated subcellular localizations based on multi-label learning using Chou’s 5-steps rule

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of four human RNA subcellular localization datasets.

Prediction of subcellular location of apoptosis proteins by incorporating PsePSSM and DCCA coefficient based on LFDA dimensionality reduction

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A novel representation for apoptosis protein subcellular localization prediction using support vector machine. prediction of protein subcellular localization using deep learning. Discriminative motif finding for predicting protein subcellular localization. Subcellular localization prediction of apoptosis proteins based on evolutionary information and support vector machine. Geary autocorrelation and DCCA coefficient application to predict apoptosis protein subcellular localization via PSSM..

The polish wheat (Triticum polonicum L.) TpSnRK2.10 and TpSnRK2.11 meditate the accumulation and the distribution of cd and Fe in transgenic Arabidopsis plants

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HZ performed the subcellular localization of TpSnRK2.11

Genome-wide analysis of SET-domain group histone methyltransferases in apple reveals their role in development and stress responses

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We used Plant-mPLoc to predict the subcellular localization of MdSDGs. The localization of MdSDGs in the nucleus was also consist- ent with their known functions in catalyzing the histone methylation process in the nucleus. All of these findings might relate to the GWD events in the apple genome. 8 Subcellular localization analysis of MdSDGs. 6), suggesting that they play regulatory roles in the drought response [55].

Proteomic profiling of multidrug-susceptible and resistant strains of Mycobacterium tuberculosis

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Subcellular location of the identified proteins All identified proteins were loaded to the PSORTb v3.0.2 program to predict their subcellular localizations. The subcellular localization information for the identified proteins is displayed in fig. 1d and showing that the majority of identified proteins were determined as cytoplasmic proteins. There were also a large proportion of identified proteins (27%) with unknown localization.. Functional assignment of proteins of the M.

Co-expression of YAP and TAZ associates with chromosomal instability in human cholangiocarcinoma

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In non-malignant cells and many tumor cells, activa- tion of the Hippo pathway and subcellular localization of YAP/TAZ are regulated through cell-cell contact and matrix stiffness [22].

Comprehensive proteome analyses of lysine acetylation in tea leaves by sensing nitrogen nutrition

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A large proportion of the identified acetylated proteins in tea leaves were located to the cytoplasm (29%) and chloroplast (39%) which were shown in subcellular localization analysis. In further researches, we discovered that 10% of the acetylated proteins presented in chloro- plast participated in the process of tricarboxylic acid (TCA) cycle and photosynthesis.

Classification and phylogenetic analyses of the Arabidopsis and tomato G-type lectin receptor kinases

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Additional file 8: Subcellular localization of the Arabidopsis G-LecRKs.. (PDF 7 kb) Additional file 11: Genetic map of the tomato G-LecRKs. Additional file 12: Subcellular localization of the tomato G-LecRKs.. All authors read and approved the final version of the manuscript.. Diversity, classification and function of the plant protein kinase superfamily. The role of the cell wall in plant immunity.

First comprehensive analysis of lysine succinylation in paper mulberry (Broussonetia papyrifera)

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WOLF PSORT was used to predict the subcellular localization of the succinylated proteins in paper mulberry. Motif analysis of lysine succinylation sites in paper mulberry. In this study, a qualitative analysis of lysine succinylation was performed to assess its physiological and biological effects in paper mulberry. Only the leaves of the tree were selected for analysis in this study.

Preliminary investigation demonstrating the GHITM gene probably involved in apoptosis and growth of the golden apple snail (Pomacea canaliculata)

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In this study, the GHITM gene was cloned and its physical and chemical properties, hydro- philic and hydrophobic properties, signal peptide predic- tion, subcellular localization prediction and other. bioinformatics analyses were also performed to predict the basic structure, properties and distribution of the GHITM gene of the golden apple snail.

Global analysis of expression, maturation and subcellular localization of mouse liver transcriptome identifies novel sex-biased and TCPOBOP-responsive long non-coding RNAs

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Deep sequencing of subcellular RNA fractions shows splicing to be predominantly co-transcriptional in the human genome but inefficient for lncRNAs. Structure and function of the type 3 deiodinase gene.. Macro lncRNAs: a new layer of cis-regulatory information in the mammalian genome

Genome-wide identification and expression analysis of PUB genes in cotton

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Prediction analysis of subcellular localization showed that the PUBs in cotton were widely localized in cells, but primarily in the nucleus. All PUB genes were involved in the response to abiotic stresses (including salt, drought, hot and cold) to varying degrees.. In the pathway, E3 is critical for the. Full list of author information is available at the end of the article. identification of the specific substrate protein and can be found in the most species [3].

Casparian strip membrane domain proteins in Gossypium arboreum: genome-wide identification and negative regulation of lateral root growth

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Analyses of the tissue and subcellular localization suggested that GaCASP27 genes (Ga08G0117) are membrane protein genes located in the root. In the GaCASP27 silenced plants and the Arabidopsis mutants, the lateral root number significantly increased.

Genome-wide identification of R2R3-MYB family in wheat and functional characteristics of the abiotic stress responsive gene TaMYB344

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Twenty-one TaMYBs were also classified into subgroup 20 because of the close relationships with AtMYB . 8 Subcellular localization and transcriptional activity analysis of TaMYB344. a Subcellular localization of TaMYB344. b Transactivation activity of TaMYB344 in yeast. In a word, phylogenetic and expression analysis provided effective references for functional re- search of TaMYBs in wheat..

Whole-genome sequencing of Puccinia striiformis f. sp. tritici mutant isolates identifies avirulence gene candidates

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LOCALIZER: subcellular localization prediction of both plant and effector proteins in the plant cell

The wild strawberry kinome: identification, classification and transcript profiling of protein kinases during development and in response to gray mold infection

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In order to estimate the time of different duplication types in the PK genes, synonymous substitution (Ks) rates of the duplicated gene pairs were determined. 1 The predicted subcellular localization of woodland strawberry protein kinases in each kinase group. Expression patterns of woodland strawberry PKs in different tissues during development.

Overexpression of herbaceous peony HSP70 confers high temperature tolerance

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In addition, qRT-PCR analysis revealed that the trans- genic lines had significantly higher transcript levels of PlHSP70, which were 10-fold higher than those of the WT on average (Fig. 2 Heterologous expression of PlHSP70 protein in E. 3 Subcellular localization of PlHSP70 in rice protoplasts. Physiological indices measurement and anatomy observation of the transgenic plants.

Genome-wide identification and expression analysis of the B-box transcription factor gene family in grapevine (Vitis vinifera L.)

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We analyzed the conserved motifs in the grapevine BBX family genes by MEME, and only 16 motifs were. 8 Subcellular localization and transcriptional activity analysis of the three BBX genes. The majority of the VviBBX proteins in the same group showed similar motif distribution, but exceptions were found (Fig. 3, VviBBX genes con- taining a similar exon-intron structure clustered together in the phylogenetic tree.

Knockdown of circ_0011946 targets miR216a-5p/BCL2L2 axis to regulate proliferation, migration, invasion and apoptosis of oral squamous cell carcinoma cells

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(E) Subcellular localization assays showing the cytoplasm localization of circ_0011946. 2 The influence of circ_0011946 on OSCC progression. (A) Circ_0011946 level was examined in CAL27 and SCC25 cells with transfection of si-NC, si-circ or #3. (B) SCMH1 expression was detected in CAL27 and SCC25 cells with transfection of si-NC, si-circ_0011946#1 or.