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Cis-acting elements

Tìm thấy 19+ kết quả cho từ khóa "Cis-acting elements"

Genome-wide in silico identification and expression analysis of beta-galactosidase family members in sweetpotato [Ipomoea batatas (L.) Lam]

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motif light responsive element, GT-1 cis-acting element involved in the salt stress, INR part of a light responsive element, IBOX part of a light responsive element, LTR cis-acting element involved in low-temperature responsiveness, MBS MYB binding site involved in drought-inducibility, MYC-like, cis-acting elements of drought-responsive, PYRIMIDINEBOXHVEPB1 cis- and trans-acting elements involved in gibberellins and abscisic acid responsiveness, RY-.

HAK/KUP/KT family potassium transporter genes are involved in potassium deficiency and stress responses in tea plants (Camellia sinensis L.): Expression and functional analysis

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The cis-acting element of auxin respon- siveness was found in the promoters of CsHAK11 and CsHAK12. The presence of multiple cis-acting elements of ABA responsiveness which we found in the promoters of the tested genes (Fig. These results suggested a lot of these cis-elements in the regulation of CsHAKs by abiotic stresses, ABA and IAA.. 7 Expression profiles of CsHAKs in tea plant roots in response to drought stress.

Comprehensive identification and expression analysis of B-Box genes in cotton

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Analysis of cis-acting elements in GhBBX promoter regions. 3 Genome-wide synteny results of BBX genes from G. A variety of cis-elements were found in the GhBBX promoter region. In the midst of these elements, the anaerobic cis-acting element was the most frequent stress response element, which appeared in the promoters of 32 GhBBX genes, followed by the cis-acting element in re- sponse to low temperature. It existed in the promoters of 20 GhBBX genes.

Genome-wide identification of the histone acetyltransferase gene family in Triticum aestivum

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Prediction and analysis of cis -acting elements in the promoter regions of TaHAT genes. A total of 1643 cis-acting elements were predicted in the promoter regions of the TaHAT genes. The expression patterns of six TaHAT genes in the sec- ond leaves of 10–14 day old wheat were measured by qRT–PCR.. As treatment time increased, there were no significant differences in the relative expression of TaHAC, TaHAM and TaHAG3.

Mining and evolution analysis of lateral organ boundaries domain (LBD) genes in Chinese white pear (Pyrus bretschneideri)

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Estimating dates and driving forces for evolution of the PbrLBD gene family. 3 The cis-acting elements on putative promoters of PbrLBD genes. (a) The distribution of cis-acting elements on putative promoters of PbrLBD genes. (b) The number of cis-acting elements on putative promoters of PbrLBD genes. 4 The evolution analysis of PbrLBD gene family. (a) Distribution and synteny of PbrLBD gene family in pear genome.

Genome-wide characterization and expression profiling of B3 superfamily during ethylene-induced flowering in pineapple (Ananas comosus L.)

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Analysis of cis -acting elements and gene ontology The 2 kb promoter region upstream of the start codon of each gene was downloaded from PGD to analyze the possible cis-acting elements of B3s by Plant CARE (http://bioinformatics.psb.ugent.be/webtools/plantcare/. wego.genomics.org.cn/) was used to analyze Gene ontol- ogy of B3 proteins.. The online version contains supplementary material available at https://doi.. org/10.1186/s . S2 Gene ontology analysis of AcB3 proteins.

Genome-wide characterization of the SPL gene family involved in the age development of Jatropha curcas

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The cis-acting elements in the promoter regions of all JcSPLs were investigated (Fig. The cis-act- ing elements involved in the light response were the. 3 Gene structure and motif analysis of the JcSPLs. b Distribution of the conserved motifs in the JcSPLs. 4 Distribution of repetitive sequences and motifs in the JcSPLs. a The number of repetitive sequences in the promoter and genomic DNA sequences of JcSPLs. b The number of cis-acting elements found in the promoter regions of JcSPLs.

Genome-wide identification and expression analysis of AP2/ERF transcription factors in sugarcane (Saccharum spontaneum L.)

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In some AP2/ERF genes, the promoter re- gion contained cis-acting elements for various transcrip- tion factors, such as MYB, MYC, ERE and DRE elements.. Expression pattern of AP2/ERF genes during sugarcane development. 4 Schematic representations for the chromosomal distribution of sugarcane AP2/ERF genes. 5 Schematic representations for the interchromosomal relationships of sugarcane AP2/ERF genes.

Genome-wide analysis of wheat DNAbinding with one finger (Dof) transcription factor genes: Evolutionary characteristics and diverse abiotic stress responses

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Additionally, CCGTCC-box, CAT-box and O2-site accounted for and 21.7% of the total number of development related elements, respectively. Except for the promoter of TaDof86 that had no TATA-box, the other members of the wheat TaDof protein family all contained these two types of cis-acting elements related to transcriptional regulation.. Among the development related elements, subfam- ily A had the largest number of CCGTCC-box, while sub- family D had 59.3% of the total number of O2-site.

Genome-wide identification, molecular evolution, and expression analysis provide new insights into the APETALA2/ethylene responsive factor (AP2/ERF) superfamily in Dimocarpus longan Lour

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Phylogenetic analysis, sequence analysis, and cis -acting elements in the promoters of members of the. longan AP2/ERF superfamily. SNPs, InDels, and AS events analyses of the longan AP2/. Details of the cis-acting elements identified in this study..

Genome-wide identification and transcript analysis of TCP transcription factors in grapevine

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The cis-acting elements analysis and tissue-specific expression patterns of VvTCP genes demonstrated that these VvTCP genes might play important roles in plant growth and development. Expression patterns of VvTCP genes during fruit development and ripening were analyzed by RNA-Seq and qRT-PCR.

Genome-wide identification of the DUF668 gene family in cotton and expression profiling analysis of GhDUF668 in Gossypium hirsutum under adverse stress

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Analysis of upstream cis-acting elements of the DUF668 gene. The upstream DNA sequences (2000 bp) of the GhDUF668 genes were obtained. The ex- pression data were analyzed by standard analysis of the transcriptome on the raw data [66–68]. According to the cDNA information of the GhDUF668 genes, primers in the specific region were designed at. the 5′ end or 3′ end of the gene sequence with Primer 5.0 software (Table S4).

The DUB family in Populus: identification, characterization, evolution and expression patterns

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To examine the regulatory elements in the promoter re- gions of the poplar DUB family genes, 2000 bp of the genomic sequence upstream of the start codon ATG were selected as the putative promoter region and ana- lyzed using the Plant–CARE database. Many cis-acting elements associated with stress or phytohormone re- sponse were present in the promoter of the DUB genes. The length of the black line represents the size of the protein.

Comprehensive genomic analysis of the DUF4228 gene family in land plants and expression profiling of ATDUF4228 under abiotic stresses

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Overall, cis-elements responsive to abiotic stresses and hormones were widely present in the promoters of the ATDFU4228 genes, but their distribution was not uniform. The number of cis-acting elements in genes of different subgroups was uneven, and there are more cis-elements in most of the genes belonging to group I than in those of groups II and III.

Comprehensive analysis of the Gossypium hirsutum L. respiratory burst oxidase homolog (Ghrboh) gene family

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Cis -element analysis of putative Ghrboh promoters We regarded the 1.5-kb genomic sequences upstream from the transcription start site (TSS) of each upland cotton rboh gene as putative promoter regions and used the PlantCARE tool to identify the presence of cis-ele- ments which could be controlling the expression of the Ghrboh genes. Potential regulatory cis-acting elements identified from the up- stream region of the Ghrboh genes are shown in Fig.

Genome-wide investigation of the heat shock transcription factor (Hsf) gene family in Tartary buckwheat (Fagopyrum tataricum)

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The length of the protein can be estimated using the scale at the bottom. d The cis-acting elements of the FtHsf promoter region, and different color blocks represent different elements. All in all, the conserved motif composition and the gene structure within the same group of FtHsf members were very similar, and the results of phylogenetic analysis supported the reliability of the popu- lation classification (Fig.

Genome-wide identification of the class III POD gene family and their expression profiling in grapevine (Vitis vinifera L)

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Moreover, the cis-acting elements in the promoter region of POD members were performed by using the PlantCARE database. In brief, most of the genes were largely participating in light regulation with key regu- latory elements (GT1-motif, G-Box, GATA-motif, and AE-Box), followed by hormones (CGTCA-motif, TGACG-motif, ABRE, and GARE-motif), stress and other regulatory factors (LTR, ARE, CCAAT-Box, CAT-BOX, o2-site.

Disequilibrium evolution of the Fructose1,6-bisphosphatase gene family leads to their functional biodiversity in Gossypium species

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Analysis of cis-acting elements in the promoter regions of homologous FBP genes. To further understand how FBP genes function, the composition and distribution of cis-regulatory elements (CRE) were identified in the 5′ untranslated regions 2000 bp upstream of each gene from the PlantCare web- site (Fig. Further analysis indicated that the 5′ up-stream re- gions of FBP genes contained almost all of the following categories of CREs: constitutive, inducible and tissue- specific.

Genome-wide analysis of proline-rich extension-like receptor protein kinase (PERK) in Brassica rapa and its association with the pollen development

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The promoter regions (1.5 kb upstream sequences) of all BrPERK genes were used to predict cis-acting elements in the PlantCARE database [56], and promoter structures were obtained with the GSDS (v2.0) [57] tool.. The distribution of the BrPERK genes on chromosomes was searched and plotted using Tbtools.

Genome-wide identification and expression patterns analysis of the RPD3/HDA1 gene family in cotton

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Cis-acting elements in the promoters of GhRPD3 genes.. The FPKM value of GhRPD3 genes in different tissues and under four different abiotic stresses.. Specific primers of GhRPD3 genes for qRT- PCR.