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Copy number variation

Tìm thấy 17+ kết quả cho từ khóa "Copy number variation"

MONTAGE: A new tool for high-throughput detection of mosaic copy number variation

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ParseCNV integrative copy number variation association software with quality tracking. doi.org/10.1093/nar/gks1346.. https://doi.org/10.1093/hmg/ddv033 Epub 2015 Jan 29.. Mosaic copy number variation in human neurons. Copy number variation and mosaicism.. https://doi.org/10.1159/. doi: https://doi.org/https://doi.org/. https://doi.org/10.1038/s .

Identification and population genetic analyses of copy number variations in six domestic goat breeds and Bezoar ibexes using next-generation sequencing

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Genome-wide patterns of copy number variation in the Chinese yak genome. Multi-ethnic cytochrome-P450 copy number profiling: novel pharmacogenetic alleles and mechanism of copy number variation formation. Gene copy number variations: it is important to determine which allele is affected. Differential quantification of CYP2D6 gene copy number by four different. Consequences of CYP2D6 copy-number variation for pharmacogenomics in psychiatry.

Evaluation of tools for identifying large copy number variations from ultra-lowcoverage whole-genome sequencing data

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Number of bases and read coverage of the cell line samples for each sample individually and for the combined samples. JS performed the evaluation of the tools. A copy number variation map of the human genome. Epigenetic Silencing of the Key Antioxidant Enzyme Catalase in Karyotypically Abnormal Human Pluripotent Stem Cells

Functional and population genetic features of copy number variations in two dairy cattle populations

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CNV: Copy number variation. performed data collection and was involved in preparation of the manuscript. MG is a member of the editorial board (Associate Editor) of BMC Genomics journal. Structural variation in the human genome.. Iafrate AJ, Feuk L, Rivera MN, Listewnik ML, Donahoe PK, Qi Y, et al.. Sebat J, Lakshmi B, Troge J, Alexander J, Young J, Lundin P, et al. Sudmant PH, Rausch T, Gardner EJ, Handsaker RE, Abyzov A, Huddleston J, et al.

Comparative analyses of copy number variations between Bos taurus and Bos indicus

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Comparative analyses of copy number variations between Bos taurus and Bos indicus. Background: Bos taurus and Bos indicus are two main sub-species of cattle. Results: Based on the new high-quality cattle reference genome ARS-UCD1.2, we identified 13,234 non-redundant CNV regions (CNVRs) from 73 animals of 10 cattle breeds (4 Bos taurus and 6 Bos indicus.

Copy number variation in human genomes from three major ethno-linguistic groups in Africa

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Background: Copy number variation is an important class of genomic variation that has been reported in 75% of the human genome. We used GenomeSTRiP and cn.MOPS to identify copy number variant regions (CNVRs).. Conclusions: Novel CNVRs in the current study increase representation of African diversity in the database of genomic variants..

Precise annotation of tick mitochondrial genomes reveals multiple copy number variation of short tandem repeats and one transposon-like element

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Copy number variation of STRs in the mt genomes within an individual animal. We defined the STR position as the genomic position of the first nucleotide of the reference STR. Importantly, it was found that almost all of the STRs had multiple variants, particularly those with copy num- bers greater than 5.

Concordance rate between copy number variants detected using either high- or medium-density single nucleotide polymorphism genotype panels and the potential of imputing copy number variants from flanking high density single nucleotide polymorphism haplotypes in cattle

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QuantiSNP: an objective Bayes hidden-Markov model to detect and accurately map copy number variation using SNP genotyping data. Copy number. A genome-wide association study of copy number variations with umbilical hernia in swine. FCGR3B copy number variation is associated with susceptibility to systemic, but not organ specific, autoimmunity. Genome-wide identification of copy number variation using high-density single nucleotide polymorphism array in Japanese black cattle.

Hecaton: Reliably detecting copy number variation in plant genomes using short read sequencing data

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Given the increasing interest of the plant research com- munity in CNV the question arises whether current methods accurately detect copy number variants (CNVs) in plants. 2019 Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0.

Detection of copy number variants in African goats using whole genome sequence data

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A copy number variation map of the human genome. https://doi.. org/10.1038/nrg3871.. https://doi.org/10.1056/. https://doi.org/10.1038/ng.909.. https://doi.org .

Structural variation of the malariaassociated human glycophorin A-B-E region

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The reference region has no segmental duplications, and is absent from copy number variation according to the gold standard track of the database of Genomic Variants (DGV) [40].

Whole genome resequencing of the Iranian native dogs and wolves to unravel variome during dog domestication

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Genome-wide patterns of copy number variation in the diversified chicken genomes using next-generation sequencing.. Domestication and early agriculture in the Mediterranean Basin:. Comparison of the fraction of olfactory receptor pseudogenes in wolf (Canis lupus) with domestic dog (Canis familiaris). Genome-wide patterns of copy number variation in the Chinese yak genome

Structural variations in papaya genomes

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Those SVs appearing in the coding regions were identified as large-effect SVs, which overlapped with 761 protein-coding genes. the positively correlated module genes were highly expressed in the corresponding tissues (trait). 1 Circle diagram of the distribution of structural variation and copy number variation in the papaya genome. the distribution of copy number variation in the whole genome of the common cultivated population. the distribution of copy number variation in the whole genome of the

Genome-wide genetic structure and selection signatures for color in 10 traditional Chinese yellow-feathered chicken breeds

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All new sequencing data generated in this study have been deposited in the NCBI sequence read archive (SRA) under accession number SRP155577.. Chicken art – ancient Chinese wisdom on chicken-raising with an appendix of the Chinese art of calligraphy.. Evolutionary dynamics of copy number variation in pig genomes in the context of adaptation and domestication.. Genome-wide patterns of copy number variation in the Chinese yak genome.

Transcriptomic and presence/absence variation in the barley genome assessed from multi-tissue mRNA sequencing and their power to predict phenotypic traits

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Distribution, functional impact, and origin mechanisms of copy number variation in the barley genome. Extension of the bayesian alphabet for genomic selection

Contrasting genetic variation and positive selection followed the divergence of NBSencoding genes in Asian and European pears

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Some NBS-encoding genes evolve rapidly through copy number variation and high ratio of non-synonymous to synonymous substitutions, but other genes evolve at a slower rate [31].. bretsch- neideri [1], an accurate characterization of NBS-encoding genes and their comparative analysis with P.

Whole-genome genotyping and resequencing reveal the association of a deletion in the complex interferon alpha gene cluster with hypothyroidism in dogs

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After applying the stringent filtering criteria described in the Methods (section “Copy number variation (CNV). The coverage of the two groups statistically significantly devi- ated in a window with coordinates CFA . Figure 2d shows the fold coverage dif- ferences between the LC case and control groups based on M-values (see Methods, section “Copy number vari- ation (CNV) analysis”) in the CNV-overlapping win- dows.

A genome-wide scan of copy number variants in three Iranian indigenous river buffaloes

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Global variation in copy number in the human genome. https://doi.org/10.1038/nature05329.. Genova F, Longeri M, Lyons LA, Bagnato A, Gandolfi B, Aberdein D, et al.. https://doi.org/10.1186/s . https://doi.org/10.1111/age.12180.. Gorla E, Cozzi MC, Román-Ponce SI, Ruiz López FJ, Vega-Murillo VE, Cerolini S, et al. https://doi.org/1 0.1186/s . doi.org/10.1186/s z.. https://doi.org/10.1111/jbg.12238.. https://doi.org/10.11 86/s .

A global analysis of CNVs in Chinese indigenous fine-wool sheep populations using whole-genome resequencing

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Copy number variation: new insights in genome diversity. Distribution and Functionality of Copy Number Variation across European Cattle Populations.. Diversity of copy number variation in the worldwide goat population. A first comparative map of copy number variations in the sheep genome. A genome-wide single nucleotide polymorphism and copy number variation analysis for number of piglets born alive.

Genome-wide detection of CNVs and their association with performance traits in broilers

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Copy number variation in the genomes of domestic animals. Global variation in copy number in the human genome. Genome-wide detection of CNVs and association with body weight in sheep based on 600K SNP arrays. Detection of copy number variants in the horse genome and examination of their association with recurrent laryngeal neuropathy. Genomic regions associated with dermal hyperpigmentation, polydactyly and other morphological traits in the Silkie chicken.