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Structural variation

Tìm thấy 14+ kết quả cho từ khóa "Structural variation"

Promising prospects of nanopore sequencing for algal hologenomics and structural variation discovery

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Impact of Canu ’ s error rate parameter on assembly of the circular chloroplast genome in the presence of structural variation (SV) (black bubbles). interpretation and revision of the manuscript. Acquisition of computing resources (40 cores Linux server) to conduct bioinformatic analyses at SMS was funded by the Laboratories of Analytical Biology (LAB) of the Smithsonian National Museum of Natural History..

Extensive structural variation in the Bowman-Birk inhibitor family in common wheat (Triticum aestivum L.)

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Extensive structural variation in the. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.. Genome-wide studies of the BBI gene family have been performed in rice [25], common bean [46] and other an- giosperms [38].

Structural variation of the malariaassociated human glycophorin A-B-E region

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The database of genomic variants: a curated collection of structural variation in the human genome

Structural variations in papaya genomes

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Those SVs appearing in the coding regions were identified as large-effect SVs, which overlapped with 761 protein-coding genes. the positively correlated module genes were highly expressed in the corresponding tissues (trait). 1 Circle diagram of the distribution of structural variation and copy number variation in the papaya genome. the distribution of copy number variation in the whole genome of the common cultivated population. the distribution of copy number variation in the whole genome of the

The effects of common structural variants on 3D chromatin structure

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We hypothesize that common structural variation (SV) in the human population can disrupt regulatory sequences and thereby influence TAD formation.

Intricate genetic variation networks control the adventitious root growth angle in apple

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The structural variation of the MdDREB2A protein affects its. org/10.1186/s .

NanotatoR: A tool for enhanced annotation of genomic structural variants

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The database of genomic variants: a curated collection of structural variation in the human genome

Copy number variation in human genomes from three major ethno-linguistic groups in Africa

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Global variation in copy number in the human genome. The clinical context of copy number variation in the human genome. Ethnologue: Languages of the World. The database of genomic variants: a curated collection of structural variation in the human genome. Linkage disequilibrium patterns of the human genome across populations. Population-genetic nature of copy number variations in the human genome. Population structure in copy number variation and SNPs in the CCL4L chemokine gene.

Hecaton: Reliably detecting copy number variation in plant genomes using short read sequencing data

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Phenotypic variation between individuals of the same plant species is caused by a host of different types of genetic variation, including single nucleotide polymor- phisms (SNPs), small insertions and deletions, and larger structural variation. CNV comprises a large part of the genetic variation found within plant popu- lations and is thought to play a key role in adaptation and evolution [1].

Precise annotation of tick mitochondrial genomes reveals multiple copy number variation of short tandem repeats and one transposon-like element

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To test our hypothesis, we sought structural variation (Methods) in the D. Since LT1 inversions were rare, 4.1 Gbp DNA-seq data were generated to cover Gbp/9.58 Kbp) of L1 in the D. As the dominant copy number was five for both R1 and R2, we used 34 × 5 STR to represent R1 and R2 in the D. which is longer than the reads in the 2 × 150 bp DNA- seq data. However, we did not obtain full-length sequences of LT1 due to sequence- length limitations in the DNA-seq data.

The genomic diversification of grapevine clones

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Adaptive genomic structural variation in the grape powdery mildew pathogen

Chromosome-length genome assembly and structural variations of the primal Basenji dog (Canis lupus familiaris) genome

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The high variation in Amy2B copy number suggests at least three possible evolutionary histories of the gene in Basenjis. Second, the ancestral founding popu- lation of the modern Basenji may have been poly- morphic for Amy2B. This analysis identified over 70, 000 SVs in CanFam_Bas relative to CanFam3.1 and over 64,000 SVs in GSD relative to CanFam3.1 (Supplemen- tary Table 7, Additional File 2).

Analysis of five deep-sequenced triogenomes of the Peninsular Malaysia Orang Asli and North Borneo populations

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The database of genomic variants: a curated collection of structural variation in the human genome. New insights into the generation and role of de novo mutations in health and disease. Sequencing and de novo assembly of 150 genomes from Denmark as a population reference. Sequence variation within the KIV-2 copy number polymorphism of the human LPA gene in African, Asian, and European populations. Copy number variation of the lipoprotein ( a.

Functional and population genetic features of copy number variations in two dairy cattle populations

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CNV: Copy number variation. performed data collection and was involved in preparation of the manuscript. MG is a member of the editorial board (Associate Editor) of BMC Genomics journal. Structural variation in the human genome.. Iafrate AJ, Feuk L, Rivera MN, Listewnik ML, Donahoe PK, Qi Y, et al.. Sebat J, Lakshmi B, Troge J, Alexander J, Young J, Lundin P, et al. Sudmant PH, Rausch T, Gardner EJ, Handsaker RE, Abyzov A, Huddleston J, et al.

Genome-wide detection of CNV regions and their potential association with growth and fatness traits in Duroc pigs

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Structural variation in the human genome.. https://doi.org/10.1038/nrg1767.. https://doi.. org/10.1093/nar/gkt958.. org/10.1038/nrg3871.. https://doi.org/10.1186/s .

GSAlign: An efficient sequence alignment tool for intra-species genomes

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Structural variation in the human genome.. algorithms for genome multiple sequence alignment. Initial sequencing and comparative analysis of the mouse genome.

Chloroplast genome variation and phylogenetic relationships of Atractylodes species

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Comparative genomics and phylogenetic analysis revealed the chloroplast genome variation and interspecific relationships of Corylus (Betulaceae) species. The evolution of the plastid chromosome in land plants: gene content, gene order, gene function. Chloroplast genome sequence of the moss Tortula ruralis: gene content, polymorphism, and structural arrangement relative to other green plant chloroplast genomes.

Capabilities, Processes, and Performance of Knowledge Management: A Structural Approach

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Capabilities, Processes, and Performance of Knowledge Management: A Structural Approach. The purpose of this study is to examine structural relationships among the capabilities, processes, and performance of knowledge management, and suggest strategic directions for the successful implementation of knowledge management.

Giáo Trình Robot Structural Tập 2

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GióYphải(GIO YY) CÁC TRƯỜNG HỢP TẢI TRỌNG Giáo trình Robot Structural 2016-Tập 2Nguyễn Hoàng AnhCompany: www.Huytraining.vn 21 ▪ tĩnhtải(TT.

Giáo trình Robot Structural Tập 1.pdf

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Structural–Tập 1 Nguyễn Hoàng AnhCompany: www.Huytraining.com 62 PTPT UỐN-BENDING(MY,MZ