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Tissue-specific expression

Tìm thấy 16+ kết quả cho từ khóa "Tissue-specific expression"

Sex- and tissue-specific transcriptome analyses and expression profiling of olfactory-related genes in Ceracris nigricornis Walker (Orthoptera: Acrididae)

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Sex- and tissue-specific expression profiling revealed that most of the candidate olfactory-related genes were antennae-enriched, but some were nonantennae-enriched, and some were sex-biased, indi- cating their different roles in the olfactory system of C.. KOBAS2.0 was used to obtain KEGG Orthology results of unigenes in the KEGG annotation. The specific primers used in the qRT-PCR analysis were designed online (https://www.ncbi.nlm.nih.gov/tools/primer-blast/.

Pan-tissue transcriptome analysis of long noncoding RNAs in the American beaver Castor canadensis

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Heatmap visualization of the tissue-specific expression profiles of the 147 novel (Fig. 4 Tissue-specific expression of novel lncRNAs in the American beaver. Ccan_OSU1_. As an independent check on the biological validity of the RNA-seq-based lncRNA gene expression measure- ments, we compared the log 2 expression in muscle of all 187 known and novel lncRNAs as measured in our study and by the Lok et al.

A holistic view of mouse enhancer architectures reveals analogous pleiotropic effects and correlation with human disease

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To this end, we examined whether an increase in the number of constituent enhancers results in an increase in total-expression of their associated genes.. a Total-expression c Genome-wide enhancer activity and tissue-specific expression profile. d Contribution of enhancer classes towards tissue-specific expression. Tissue-specific expression.

Transcriptome characterization of BPG axis and expression profiles of ovarian steroidogenesis-related genes in the Japanese sardine

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Among those proteins, we succeeded in obtaining sequence information of many key genes in- volved in the BPG axis of Japanese sardine.. than that in brain [29], similar to the tissue-specific expression patterns observed in the sardine.. Differential expression of reproduction-related genes in the BPG axis. Many genes encoding the major regulators in the BPG axis were identified in the Japanese sardine, and their transcription levels showed tissue- and sex-specific ex- pression patterns (Fig.

Genome-wide analysis of the NAC transcription factor family in broomcorn millet (Panicum miliaceum L.) and expression analysis under drought stress

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The tissue-specific expression patterns of PmNAC genes might enable the combinatorial usage of PmNAC genes in the transcriptional regulation of different tis- sues, whereas ubiquitously expressed PmNAC genes might regulate the transcription of a broad set of genes.. Seven highly expressed PmNAC genes (FPKM.

Analysis of MADS-box genes revealed modified flowering gene network and diurnal expression in pineapple

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To inves- tigate the potential roles of MADS-box genes in. 4 Distribution of MADS-box genes in pineapple linkage groups (LGs). 5 A heat map of tissue-specific expression data of MADS-box genes in pineapple. 6 Relative expression of MADS-box genes in pineapple flower and leaves by qRT-PCR. pineapple CAM photosynthesis, we studied the expression pattern of MADS-box genes in photosynthetic (green tip) and non-photosynthetic (white base) leaf tissues. 7, MADS-box genes can be classified into three clusters

Genome-wide analysis of SET-domain group histone methyltransferases in apple reveals their role in development and stress responses

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The tissue-specific expression patterns of MdSDGs among the 72 apple tissues in the different apple developmental stages were characterized to provide insight into their potential functions in development. The expression profiles of MdSDGs were also investigated in fruit development, the breaking of bud dormancy, and responses to abiotic and biotic stress.

Genome-wide identification and transcript analysis of TCP transcription factors in grapevine

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The cis-acting elements analysis and tissue-specific expression patterns of VvTCP genes demonstrated that these VvTCP genes might play important roles in plant growth and development. Expression patterns of VvTCP genes during fruit development and ripening were analyzed by RNA-Seq and qRT-PCR.

Genome-wide identification of the restorerof-fertility-like (RFL) gene family in Brassica napus and expression analysis in Shaan2A cytoplasmic male sterility

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Based on the results of phylogenetic analysis, 12 BnRFL genes, which were mentioned in the phylogenetic ana- lysis, were selected for tissue-specific expression analysis in the sterile line Shaan2A, the maintainer line Shaan2B and the restorer line KC01 by qRT-PCR. 2 Distribution of 20 motifs identified in BnRFL proteins, and sequence of the conserved motif 1. RFLs in the cluster of known RF proteins are indicated in pink.

Genome-wide identification, evolution and expression analysis of the aspartic protease gene family during rapid growth of moso bamboo (Phyllostachys edulis) shoots

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Expression pattern analysis showed that PhAP s exhibited tissue-specific expression patterns, and several sets of PhAP s may play important roles during moso bamboo rapid growth. Genome-wide identification of AP genes from the moso bamboo genome. After two rounds of moso bamboo genome searching via HMMER v3 (the details of which are in the materials and methods), a total of 129 Asp family proteins with a conserved Asp domain were analyzed via the NCBI- CDD and Pfam database (Fig.

Genome-wide identification and expression analysis of the NAC transcription factor family in tomato (Solanum lycopersicum) during aluminum stress

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This family seemed to be one of the largest TFs up till now. 4 Schematic representations for the distribution and duplication of 93 SlNAC genes. 5 Temporal and tissue-specific expression patterns of 93 SlNAC genes. a Expression profile of SlNAC genes in cultivated tomato cultivar Heniz.. b Expression profile of SlNAC genes in wild species S. 6 Expression profiles of the SlNAC genes under Al stress. a Hierachical clustering of expression profiles of SlNAC genes during Al stress.

Transcriptome analysis reveals molecular mechanisms responsive to acute cold stress in the tropical stenothermal fish tiger barb (Puntius tetrazona)

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The acute cold-induced expression of USP4 was found mainly in the muscle and the brain (Fig. 6 Radar analysis of the temperature-dependent tissue-specific expression of ubiquitylation/deubiquitylation-related genes. in the brain (77.7-fold) and the muscle (16.7-fold) after acute 13 °C cold stress (Padj <. Our qPCR results confirmed this significant difference in the brain and the muscle with a up-regulation of 18.6 and 15.0 fold (P <.

MAPK cascade gene family in Camellia sinensis: In-silico identification, expression profiles and regulatory network analysis

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MAPKKK17 and MAPKKK18 belong to Ser/Thr protein kinase family and help in the ABA-dependent activation of the. 6 Functional interaction networks of MKK and MPK proteins. 7 Tissue-specific expression patterns of (a) MKK and (b) MPK genes in C. Among the 5 MKK and 16 MPK genes analysed, different levels of expression were observed and transcripts were barely detectable in few cases (Fig.

The landscape of lncRNAs in Cydia pomonella provides insights into their signatures and potential roles in transcriptional regulation

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To examine the tissue-specific expression patterns of lncRNAs across distinct tissues, we first calculated the specificity indices of mRNAs and lncRNAs for nine tis- sue samples based on the definition of the Jensen- Shannon (JS) divergence score. In addition, we calculated the JS scores of lncRNAs and mRNAs for the samples at different developmental stages. 3 Discrete expression pattern and tissue specificity of lncRNAs in C.

TaWRKY40 transcription factor positively regulate the expression of TaGAPC1 to enhance drought tolerance

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These results demonstrated that TaWRKY40 may positively regulate the TaGAPC1 expression. a Time-course expression of TaGAPC1 in in wheat.. b Tissue-specific expression pattern of TaGAPC1 in wheat. c TaGAPC1 is localized in the nucleus and cytoplasm of wheat protoplast cells, TaWRKY40 is localized in the nucleus of wheat protoplast cells. important clue to investigate the secondary functions of TaGAPC1..

HAK/KUP/KT family potassium transporter genes are involved in potassium deficiency and stress responses in tea plants (Camellia sinensis L.): Expression and functional analysis

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Importantly, the organs/tissues repre- sented different developmental stages of the tea plant (Fig. 4, some CsHAKs showed similar expression levels in the eight tissues, while other CsHAKs presented significant tissue-specific expression. 3 Cis -acting elements in the promoter regions of CsHAKs .

Genome-wide identification of GH3 genes in Brassica oleracea and identification of a promoter region for anther-specific expression of a GH3 gene

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One hundred eighty-six bp region upstream of BoGH3.13–1 is sufficient for anther-specific expression DNA sequences responsible for tissue-specific expres- sion of BoGH3.13 – 1 was investigated with different DNA regions upstream of the start codon (Fig. sequence is important for anther-specific expression of BoGH3.13–1 (Fig.

Gene coexpression network analysis and tissue-specific profiling of gene expression in jute (Corchorus capsularis L.)

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TiGER: a database for tissue-specific gene expression and regulation. Comprehensive metabolic and transcriptomic profiling of various tissues provide insights for saponin biosynthesis in the medicinally important Asparagus racemosus. Tissue-specific transcriptome analysis reveals candidate genes for terpenoid and phenylpropanoid metabolism in the medicinal plant ferula assafoetida. Differential expression of RNA-Seq data at the gene level – the DESeq package

Tissue-specific transposon-associated small RNAs in the gymnosperm tree, Norway spruce

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Two CLSY homologs were differentially expressed among tissues in Norway spruce (Additional file 1: Figure S2), suggesting that similar mechanisms may underlie the tissue-specific production of 24-nt sRNAs in gymnosperms. Furthermore, several putative RdDM components showed higher expression in non- needle tissues, which may connect to the observed tissue-specific accumulation of 24-nt sRNAs (Additional file 1: Figure S2)..

Tissue-specific transcriptome analyses reveal candidate genes for stilbene, flavonoid and anthraquinone biosynthesis in the medicinal plant Polygonum cuspidatum

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The tissue- specific expression patterns of the synthase genes in- volved in the phenylpropanoid pathway are presented in a heat map (Fig. All PALs, except PAL5, were expressed at high levels in the stem, at intermediate levels in the root, and at low levels in the leaf. C4H and 4CL had high expression levels in the root and stem but lower levels in the leaf (Fig.