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Brachypodium distachyon

Tìm thấy 16+ kết quả cho từ khóa "Brachypodium distachyon"

Genome-wide survey and expression analysis of calcium-dependent protein kinase (CDPK) in grass Brachypodium distachyon

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Genome-wide survey and expression analysis of calcium-dependent protein kinase (CDPK) in grass Brachypodium distachyon. Calcium-dependent protein kinases (CDPK) were important Ca 2+. Results showed that all BdCDPK family members contained conserved catalytic Ser/Thr protein kinase domain, autoinhibitory domain, and EF-hand domain, and a variable N-terminal domain, could be divided into four subgroup (I-IV), based upon sequence homology.

Genome-wide identification of ATP binding cassette (ABC) transporter and heavy metal associated (HMA) gene families in flax (Linum usitatissimum L.)

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Unrooted phylogenetic trees were constructed using the protein sequences for each of the eight ABC trans- porter and four HMA gene subfamilies of Linum usita- tissimum , Arabidopsis thaliana , Populus trichocarpa , Vitis vinifera , and Brachypodium distachyon (Fig. Based on the phylogenetic relationships of flax and other species, the ABC transporter genes were divided into eight subfamilies: ABCA-ABCG and ABCI (Fig.

Comprehensive analysis of NAC transcription factor family uncovers drought and salinity stress response in pearl millet (Pennisetum glaucum)

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Systematic analysis and identification of stress-responsive genes of the NAC gene family in Brachypodium distachyon. Analyses of the NAC transcription factor gene family in gossypium raimondii Ulbr.: chromosomal location, structure, phylogeny, and expression patterns. Genomic analysis of NAC transcription factors in banana (Musa acuminata) and definition of NAC orthologous groups for monocots and dicots.

Genome-wide identification of R2R3-MYB family in wheat and functional characteristics of the abiotic stress responsive gene TaMYB344

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The number of R2R3-MYBs in each wheat subgenome A/B/D (each like a diploid) is more than that of diploid model plants Arabidopsis thaliana, Oryza sativa, and Brachypodium distachyon. It indicates that the R2R3-MYB family in wheat has expanded along with genome duplication. 1) of R2R3-MYBs were identified in wheat.

Extensive structural variation in the Bowman-Birk inhibitor family in common wheat (Triticum aestivum L.)

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Protein sequences were obtained from the reference as- semblies of Hordeum vulgare (IBSC_v2, 236,301 protein sequences), Brachypodium distachyon (v pro- tein sequences), Aegilops tauschii (Aet_v protein sequences) [77], and Triticum urartu (ASM34745v1, 33,483 protein sequences) [78] from Ensembl Plants (https://plants.ensembl.org/info/data/ftp/. rice.plantbiology.msu.edu) and converted to IRGSP-1.0 gene IDs and Zea mays proteins (Zea_mays.B73_Ref- Gen_v4, 131,585 protein sequences) were downloaded

First comprehensive analysis of lysine succinylation in paper mulberry (Broussonetia papyrifera)

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Previous studies of lysine succinylation in wheat [49], patchouli plant leaves [45], Brachypodium distachyon L. The analysis of the subcellular localization of the suc- cinylated proteins showed that most are located in the chloroplast (51.02. 4 Succinylated enzymes involved in the TCA cycle. Previous studies have demonstrated that lysine succinylation is widespread in chloroplasts [31, 50]. 5), lysine succinylation may play an important role in photosynthesis.

Analysis of MADS-box genes revealed modified flowering gene network and diurnal expression in pineapple

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Genome- wide analysis of the MADS-box gene family in Brachypodium distachyon.. Genome-wide identification and analysis of the MADS-box gene family in bread wheat ( Triticum aestivum L. Genome-wide analysis of the MADS-box gene family in Populus trichocarpa

Genome sequence of Apostasia ramifera provides insights into the adaptive evolution in orchids

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Genome sequencing and analysis of the model grass Brachypodium distachyon

Pi-starvation induced transcriptional changes in barley revealed by a comprehensive RNA-Seq and degradome analyses

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Investigations of barley stripe mosaic virus as a gene silencing vector in barley roots and in Brachypodium distachyon and oat. Gibberellin signaling in barley aleurone cells

Genome-wide identification and functional analysis of the TIFY gene family in the response to multiple stresses in Brassica napus L.

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Identification and characterization of TIFY family genes in Brachypodium distachyon. Genome-wide identification and analysis of the TIFY gene family in grape. Isolation, structural analysis, and expression characteristics of the maize TIFY gene family. Genome-wide identification and functional analysis of the TIFY gene family in response to drought in cotton. Genome-wide identification, expression profile of the TIFY gene family in Brassica oleracea var.

Genome-wide identification of the class III POD gene family and their expression profiling in grapevine (Vitis vinifera L)

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Genome-wide identification, phylogeny and expression profiling of class III peroxidases gene family in Brachypodium distachyon. Evolution and expression divergence of E2 gene family under multiple abiotic and phytohormones stresses in Brassica rapa. Genome-wide identification, classification, and expression pattern of homeobox gene family in Brassica rapa under various stresses. Genome-wide analysis of autophagy-related genes (ARGs) in grapevine and plant tolerance to copper stress

Basic leucine zipper (bZIP) transcription factor genes and their responses to drought stress in ginseng, Panax ginseng C.A. Meyer

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The size of the PgbZIP gene family is comparable to those identified in rice (89 bZIP genes) [7], Brachypodium distachyon (96) [9], bar- ley and sorghum but larger than those identified in Arabidopsis castor bean cucumber (64) [36] and grapevine and smaller than those identified in maize (125) [8] and soybean (160) [13].

Genome-wide small RNA profiling reveals tiller development in tall fescue (Festuca arundinacea Schreb)

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Finally, 208 miRNAs including 148 known and 60 novel miRNAs in tall fescue were obtained by blastx searching against mature miRNAs from Brachypodium distachyon, Oryza sativa, Zea mays, Hordeum vulgare, Aegilops tauschii and Festuca arundinacea, which were more than the tillering-responsive small RNAs (32 miRNAs) identified in switchgrass through a genome-wide analysis [29].

Differential expression of microRNAs in tomato leaves treated with different light qualities

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Genome-wide identification and evolutionary analyses of the PP2C gene family with their expression profiling in response to multiple stresses in Brachypodium distachyon

A study on cloning and expression of stress induced DREB transcription factor gene from rice (Oryza sativa)

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L) is the staple food for half of the world's population. alignment of the DREB genes of model plants such as Arabidopsis thaliana, Brachypodium distachyon, revealed the AP2/ERF domain was relative conservative. Reverse primers - 50-GGGCTCGAGAT CCTTCTCATCAGAAGGTA-30) was used to amplify the first fragment of the target gene from the cold-treated, dry and salt stress leaf samples.

Transcriptomic and presence/absence variation in the barley genome assessed from multi-tissue mRNA sequencing and their power to predict phenotypic traits

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All contigs that had a homology (e-value ≤ 1e-5, identity ≥ 98.0%) to an anno- tated protein in at least one of the species Arabidopsis thaliana, Brachypodium distachyon, Sorghum bicolor, Zea mays, Oryza sativa, Triticum aevisticum, Triticum dicoccum, and Secale cereale were retained. using a gene annotation file that comprised low and high confidence genes of transcripts defined in the barley ref- erence genome [6] and the newly identified genes of the de novo assembly..

Identification and evolution analysis of the JAZ gene family in maize

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To identify candidate JAZ family members in monocots, the GRASSIUM (Grass Regulatory Information Services, https://www.grassius.org) [37] database was used to search ZIM [9] from four published plant genomes, in- cluding maize (Zea mays), rice (Oryza sativa japonica), sorghum (Sorghum bicolor), and Brachypodium (Brachy- podium distachyon).

Genome-wide identification and characterization of ABA receptor PYL gene family in rice

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Non-redundant functions of the dimeric ABA receptor BdPYL1 in the grass Brachypodium.. Zhang F, Wei Q, Shi J, Jin X, He Y, Zhang Y, et al. Wang Y, Wu Y, Duan C, Chen P, Li Q, Dai S, et al. The expression profiling of the CsPYL, CsPP2C and CsSnRK2 gene families during fruit development and drought stress in cucumber. Sakai H, Lee SS, Tanaka T, Numa H, Kim J, Kawahara Y, et al. Kawahara Y, de la Bastide M, Hamilton JP, Kanamori H, McCombie WR, Ouyang S, et al.

An updated explanation of ancestral karyotype changes and reconstruction of evolutionary trajectories to form Camelina sativa chromosomes

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Reconstruction of evolutionary trajectories of chromosomes unraveled independent genomic repatterning between Triticeae and Brachypodium.. An update to the Canadian range, abundance, and ploidy of Camelina spp. (Brassicaceae) east of the Rocky Mountains. Assessing Diversity in the Camelina Genus Provides Insights into the Genome Structure of Camelina sativa

Genome-wide identification, characterization, and expression analysis of the NAC transcription factor family in orchardgrass (Dactylis glomerata L.)

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Seventy-seven DgNAC genes showed a syntenic relationship with Brachypodium dis- tachyon, Setaria viridis (69), Oryza sativa (69), Hordeum vulgare (68), Sorghum bicolor (64) and Arabidopsis thali- ana (6) (Additional file 3). Expression profiling of DgNAC genes in different tissues based on RNA-seq data.