Có 60+ tài liệu thuộc chủ đề "BMC Genomics"
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Genomic insight into diet adaptation in the biological control agent Cryptolaemus. Some of the immune effector genes were dramatically downregulated when larvae were fed unnatural diets.. The evolution of insect immunity allows insects to change their phenotype in response to changes in the environment, including diet and microbiota [10]. The images or other third party material in this article are...
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Background: Salmon Rickettsial Syndrome (SRS), caused by Piscirickettsia salmonis, is one of the primary causes of morbidity and mortality in Atlantic salmon aquaculture, particularly in Chile. In parallel, head kidney and liver samples were taken from animals of the same population with high and low genomic breeding values for resistance, and used for RNA-Sequencing to compare their transcriptome profile both...
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A total of 103 F 7 recombinant inbred lines (RILs) derived from a cross between K099 (short primary root) and Fendou 16 (long primary root) were used to identify QTL for PRL in soybean. Results: QTL analysis using inclusive composite interval mapping method identified a major QTL on Gm16 between SSR markers Sat_165 and Satt621, explaining 30.25 % of the...
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However, knowledge of mTERF genes in grapevine ( Vitis L.) is limited.. Results: In this research, a comprehensive analysis of grape mTERF ( VvmTERF ) genes, including chromosome locations, phylogeny, protein motifs, gene structures, gene duplications, synteny analysis and expression profiles, was conducted. As a result, a total of 25 mTERF genes were identified from the grape genome, which are...
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Results: We produced subgenome calls for 704 syntenic blocks and inferred A or B subgenomic identity for 59,377 genes 81% of the annotated genes. Synonymous substitution rates between A and B genes support A and B calls. Eleusine coracana (finger millet) is an important small- seed cereal crop in its native Africa and South Asia [1, 2]. The images or...
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The eukaryotic MEP-pathway genes are evolutionarily conserved and originated from Chlaymidia and cyanobacteria. The MEP-pathway is present in all plastid-bearing organisms and most eubacteria. However, no comprehensive study reveals the origination and evolutionary characteristics of MEP-pathway genes in eukaryotes.. Results: Here, detailed bioinformatics analyses of the MEP-pathway provide an in-depth understanding the evolutionary history of this indispensable biochemical route, and...
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marker in Tartary buckwheat (Fagopyrum tataricum). Background: Tartary buckwheat (Fagopyrum tataricum), an important pseudocereal crop, has high economic value due to its nutritional and medicinal properties. However, dehulling of Tartary buckwheat is difficult owing to its thick and tough hull, which has greatly limited the development of the Tartary buckwheat processing industry. A major locus detected in all three trials...
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A study of the heterochronic sense/. Recently, reference floral transcriptomes were generated from sexual and apomictic biotypes of Paspalum notatum, one of the most well-known plant models for the study of apomixis. Members of the AP2, ARF, MYB and WRKY transcription factor families, as well as the auxin, jasmonate and cytokinin plant hormone families appeared broadly deregulated. Podio et al....
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Multi-species transcriptome meta-analysis of the response to retinoic acid in. vertebrates and comparative analysis of the effects of retinol and retinoic acid on gene expression in LMH cells. BMC Genomics https://doi.org/10.1186/s . A meta-analysis of the effects of retinoic acid on gene expression in different vertebrate tissues. The results of each respective differential expression analysis from chicken hepatocellular carcinoma (LMH)...
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Most of the olfactory genes identified in two species were homologous. In total, 14 OBPs were expressed primarily in the antennae.. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence...
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In the growth process of broilers, gene expression varies at different growth stages. However, limited research has been conducted on the molecular mechanisms of muscle growth and development in yellow-feathered male chickens.. Results: In the study, we used RNA-seq to study the transcriptome of the breast muscle of male Jinghai yellow chickens at 4 (M4F), 8 (M8F) and 12 weeks...
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A QTL for conformation of back and croup influences lateral gait quality in Icelandic horses. A complex interaction between the spine and the muscles of the back contribute to locomotion soundness, gait ability, and performance of riding and racehorses. The conformation of back and croup plays an important role on riding ability in Icelandic horses. associated with conformation of back...
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Results: We investigated early transcriptional changes in Arabidopsis associated with expression of the Beet curly top virus C4 protein that represent initial events in pathogenesis via a comparative transcriptional analysis of mRNAs and small RNAs. Early transcriptional changes that disrupted hormone homeostasis, 18 and 19 differentially expressed genes at both 6- and 12-hpi, respectively, were responsive to C4-induced regulation of...
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Immune profiles of male giant panda ( Ailuropoda melanoleuca ) during the breeding season. Knowledge of immunity changes of male giant pandas during the breeding season is limited.. We identified 318 up-regulated DEGs and 43 down-regulated DEGs, which were enriched in 87 GO terms and 6 KEGG pathways. KLRD1 encodes CD94, whose complex is an inhibitor of the cytotoxic activity...
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Flagellar motility genes were especially up-regulated in the apoplast and twitching motility genes showed a more sustained expression in planta regardless of the condition. The upstream regulators of the T3SS were exclusively up- regulated in the apoplast, preceding the induction of their downstream targets. Finally, a large subset of genes involved in central metabolism was exclusively down-regulated in the xylem...
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flooding mitigation of the damage induced by low-temperature stress in direct seeded early indica rice at the seedling stage. Background: Low temperature (LT) often occurs at the seedling stage in the early rice-growing season, especially for direct seeded early-season indica rice, and using flooding irrigation can mitigate LT damage in rice seedlings. Our study provided new insights for efforts to...
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Identification of the molecular regulation of differences in lipid deposition in. Moreover, 72 DEGs related to lipid metabolism were screened, which were involved in adipocyte differentiation, fatty acid transport and fatty acid synthesis, lipid stabilization, and lipolysis. Among the 72 DEGs, 19 DEGs were enriched in the PPAR signaling pathway, indicating its main contribution to the regulation of the difference...
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Adaptation of Oxford Nanopore technology for hepatitis C whole genome sequencing and identification of within-host viral. High throughput characterization of full genome, within-host variants is still not possible despite advances in next generation sequencing. This limitation constrains viral genomic studies that depend on accurate identification of hemi-genome or whole genome, within-host variants, especially those occurring at low frequencies. ONT is...
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We then applied network component analysis (NCA), a matrix decomposition method, to reconstruct the activities of the TFs over time. responsible for each of the modes. Full list of author information is available at the end of the article. CesRK, and AgrCA are some of the TCSs in L. “Network component analysis” section), and defines the topology matrix A of...
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Results: An association mapping panel, consisting of 662 doubled haploid (DH) lines, was evaluated for yield contributing traits under normal and natural heat stress conditions. Genome wide association studies (GWAS) carried out using 187,000 SNPs and 130 SNPs significantly associated for grain yield (GY), days to 50% anthesis (AD), days to 50% silking (SD), anthesis-silking interval (ASI), plant height (PH),...