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Có 20+ tài liệu thuộc chủ đề "Transcription factor"

Analysis of temporal gene regulation of Listeria monocytogenes revealed distinct regulatory response modes after exposure to high pressure processing

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We then applied network component analysis (NCA), a matrix decomposition method, to reconstruct the activities of the TFs over time. responsible for each of the modes. Full list of author information is available at the end of the article. CesRK, and AgrCA are some of the TCSs in L. “Network component analysis” section), and defines the topology matrix A of...

Transcriptomes analysis reveals novel insight into the molecular mechanisms of somatic embryogenesis in Hevea brasiliensis

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insight into the molecular mechanisms of somatic embryogenesis in Hevea brasiliensis. Background: Somatic embryogenesis (SE) is a promising technology for plant vegetative propagation, which has an important role in tree breeding. Full list of author information is available at the end of the article. Somatic embryogenesis (SE) is a promising and rapid vegetative propagation technique for plant regeneration.. reported that...

Genome-wide identification and expression analysis of the WRKY transcription factor family in flax (Linum usitatissimum L.)

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Genome-wide identification and expression analysis of the WRKY transcription factor family in flax ( Linum usitatissimum L.). Background: Members of the WRKY protein family, one of the largest transcription factor families in plants, are involved in plant growth and development, signal transduction, senescence, and stress resistance. Results: In this study, comprehensive genome-wide characterization of the flax WRKY gene family was...

Physiological and transcriptomic analyses reveal the roles of secondary metabolism in the adaptive responses of Stylosanthes to manganese toxicity

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Physiological and transcriptomic analyses reveal the roles of secondary metabolism in the adaptive responses of Stylosanthes to manganese toxicity. However, little is known about the adaptive responses of stylo to Mn toxicity. Thus, this study integrated both physiological and transcriptomic analyses of stylo subjected to Mn toxicity.. In contrast, the activities of enzymes, such as peroxidase (POD), phenylalanine ammonia-lyase (PAL)...

PacBio full-length transcriptome of wild apple (Malus sieversii) provides insights into canker disease dynamic response

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We determined that the JA was initially produced to respond to the necrotrophic pathogen V. Additionally, functional annotation analysis of DETs indicated that the wild apple response to the infection of V. The co-expression network of the differentially expressed TFs revealed 264 candidate TF transcripts. Additionally, the enriched disease resistance pathways and differentially expressed TFs dynamics collectively contributed to the...

Comprehensive analysis of NAC transcription factor family uncovers drought and salinity stress response in pearl millet (Pennisetum glaucum)

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Comprehensive analysis of NAC. transcription factor family uncovers drought and salinity stress response in pearl millet (Pennisetum glaucum). Background: Pearl millet (Pennisetum glaucum) is a cereal crop that possesses the ability to withstand drought, salinity and high temperature stresses. The NAC [NAM (No Apical Meristem), ATAF1 (Arabidopsis thaliana Activation Factor 1), and CUC2 (Cup-shaped Cotyledon)] transcription factor family is one...

Whole-genome characterization of Rosa chinensis AP2/ERF transcription factors and analysis of negative regulator RcDREB2B in Arabidopsis

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Whole-genome characterization of Rosa chinensis AP2/ERF transcription factors and analysis of negative regulator RcDREB2B in Arabidopsis. One of the main. The analysis of the gene structure revealed that the introns ranged from 0 to 9 in number.. Distributions of cis-acting elements indicated that members of the AP2/ERF family are frequently involved in growth and development, phytohormone and stress response in...

Genome of the four-finger threadfin Eleutheronema tetradactylum (Perciforms: Polynemidae)

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Genome of the four-finger threadfin. Additionally, the four-finger threadfin Eleutheronema tetradactylum is of conservation relevance since its populations are considered to be in rapid decline and it is classified as endangered. resources are currently available for the threadfin family Polynemidae.. Results: We sequenced and assembled the first threadfin fish genome, the four-finger threadfin E. Just of the genome sequence was...

Methylome and transcriptome profiles in three yak tissues revealed that DNA methylation and the transcription factor ZGPAT co-regulate milk production

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Hypomethylated genes with high expression levels might regulate milk production by influencing protein processing in the endoplasmic reticulum.. According to weighted gene correlation network analysis, the “ hub ” gene ZGPAT was highly expressed in the post- mature breast tissue, indicating that it potentially regulates the transcription of 280 genes that influence protein synthesis, processing, and secretion. The tissue network...

Integrating binding and expression data to predict transcription factors combined function

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Background: Transcription factor binding to the regulatory region of a gene induces or represses its gene. These proteins form complexes which bind to the DNA as one-units. The binding of two factors to a shared site does not always lead to a functional interaction.. Results: We propose a method to predict the combined functions of two factors using comparable binding...

The GAMYB gene in rye: Sequence, polymorphisms, map location, allelespecific markers, and relationship with αamylase activity

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Comparative analysis of the ScGAMYB sequence revealed its high level of homology to wheat and barley. Segregation of the ScGAMYB alleles showed significant relationship with α -amylase activity (AMY).. Conclusions: The research showed the strong similarity of rye GAMYB sequence to its orthologues in other Graminae and confirmed the position in the genome consistent with the collinearity rule of cereal...

Genome-wide identification and expression analysis of AP2/ERF transcription factors in sugarcane (Saccharum spontaneum L.)

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Genome-wide identification and expression analysis of AP2/ERF transcription factors in sugarcane ( Saccharum spontaneum L.). However, few studies concerning AP2/ERF genes in sugarcane which are the most critical sugar and energy crops worldwide.. Results: A total of 218 AP2/ERF genes were identified in the Saccharum spontaneum genome. Sugarcane and sorghum had a collinear relationship between 168 SsAP2/ERF genes and sorghum...

Identification and expression analysis of GRAS transcription factors in the wild relative of sweet potato Ipomoea trifida

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Identification and expression analysis of GRAS transcription factors in the wild relative of sweet potato Ipomoea trifida. Sweet potato is an important food, vegetable, industrial raw material, and biofuel crop in the world, which plays an essential role in food security in China . However, the function of sweet potato GRAS genes remains unknown.. Gene structure showed that most of...

Transcriptomic analysis reveals the mechanism of thermosensitive genic male sterility (TGMS) of Brassica napus under the high temperature inducement

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mechanism of thermosensitive genic male sterility (TGMS) of Brassica napus under the high temperature inducement. Background: The thermo-sensitive genic male sterility (TGMS) of Brassica napus facilitates reproductive researches and hybrid seed production. Results: In total, RNA-seq analysis showed that 2202 genes (561 up-regulated and 1641 down-regulated) were significantly differentially expressed in the fertile flowers of 160S-MF at 25 °C when...

Comprehensive analysis of bZIP transcription factors uncovers their roles during dimorphic floret differentiation and stress response in Cleistogenes songorica

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By analysing the expression patterns of CsbZIPs in different tissues and under abiotic stresses, 21 CsbZIP genes were differentially expressed between chasmogamous (CH) and cleistogamous (CL) flowers, including two FLOWERING LOCUS D (FD) genes. Strikingly, 17 common CsbZIP genes showed differential expression under stress response and during CL flowering. songorica and provide abiotic stress-responsive and CL-associated candidate CsbZIP genes for...

Comparative transcriptome analysis and ChIP-sequencing reveals stage-specific gene expression and regulation profiles associated with pollen wall formation in Brassica rapa

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rapa genic male sterile AB line in this study revealed that the aberrant meiotic cytokinesis and premature tapetal programmed cell death occurring in the sterile line ultimately resulted in microspore degeneration and pollen wall defect. Further gene expression profile of the sterile and fertile floral buds of ‘ Bcajh97-01A/B ’ at five typical developmental stages during pollen development supported the...

The NAC family transcription factor GmNAC42–1 regulates biosynthesis of the anticancer and neuroprotective glyceollins in soybean

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GmNAC42 – 1 regulates biosynthesis of the anticancer and neuroprotective glyceollins in soybean. We chose to functionally characterize the NAC (NAM/ATAF1/2/CUC2)-family TF GmNAC42–1 that was annotated as an SAR gene and a homolog of the Arabidopsis thaliana (Arabidopsis) indole alkaloid phytoalexin regulator ANAC042 . Overexpressing and silencing GmNAC42–1 in elicited soybean hairy roots dramatically enhanced and suppressed the amounts of...

Genome-wide identification and expression profiling of trihelix gene family under abiotic stresses in wheat

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However, to date, no systemic characterization of the trihelix genes has yet been conducted in wheat and its close relatives.. Results: We identified a total of 94 trihelix genes in wheat, as well as 22 trihelix genes in Triticum urartu, 29 in Aegilops tauschii, and 31 in Brachypodium distachyon. We analyzed the chromosomal locations and orthology relations of the identified...

New insights in the control of antioxidants accumulation in tomato by transcriptomic analyses of genotypes exhibiting contrasting levels of fruit metabolites

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New insights in the control of antioxidants accumulation in tomato by transcriptomic analyses of genotypes exhibiting. Here, we analyzed the transcriptomic changes occurring during ripening in the fruits of two tomato cultivars (E1 and E115), characterized by a different accumulation of antioxidants, in order to identify candidate genes potentially involved in the biosynthesis of ascorbic acid and phenylpropanoids.. Results obtained...