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Chủ đề : Protein coding genes


Có 10+ tài liệu thuộc chủ đề "Protein coding genes"

Insights into phylogenetic relationships and genome evolution of subfamily Commelinoideae (Commelinaceae Mirb.) inferred from complete chloroplast genomes

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Only four species in tribe Commelineae presented IR expansion, which affected duplication of the rpl22 gene. This result differs significantly from the current classification of Commelinaceae. Also, further research is needed to revise the position of Palisota in the current classification of Commelinaceae.. The images or other third party material in this article are included in the article's Creative Commons...

Decoding first complete chloroplast genome of toothbrush tree (Salvadora persica L.): Insight into genome evolution, sequence divergence and phylogenetic relationship within Brassicales

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Decoding first complete chloroplast genome of toothbrush tree ( Salvadora persica L. Herein, we have sequenced the complete chloroplast genome of S. The cp genome of S. persica cp genome had 154 SSRs with the highest number in the LSC region. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to...

Functional examination of lncRNAs in allotetraploid Gossypium hirsutum

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Functional examination of lncRNAs in allotetraploid Gossypium hirsutum. The function of the lncRNAs activated in allotetraploid cotton remain largely unknown.. LncRNA expression was preferentially associated with that of the flanking PCGs. A comparative analysis of the human and mouse genomes determined that lncRNAs are under positive selection rather than neutral mutation [2]. altered expression of lncRNAs during domestication has likewise...

Identification and analysis of long noncoding RNAs in response to H5N1 influenza viruses in duck (Anas platyrhynchos)

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Background: Long non-coding RNAs (lncRNAs) are important component of mammalian genomes, where their numbers are even larger than that of protein-coding genes. 22,630) have more lncRNA genes than protein-coding genes in the. Recently, mammalian lncRNAs were reported to play critical roles in immune response to influenza A virus infections. We then collected 151,970 assembled transcripts from RNA-Seq data of 21...

Recombination-independent rapid convergent evolution of the gastric pathogen Helicobacter pylori

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Recombination-independent rapid convergent evolution of the gastric pathogen Helicobacter pylori. Background: Helicobacter pylori is a human stomach pathogen, naturally-competent for DNA uptake, and prone to homologous recombination. We demonstrate here that, contrary to dogma, convergent mutation is a key contributor to Helicobacter pylori homoplasy, potentially driven by adaptive evolution of proteins.. Moreover, the majority of the codon positions with homoplastic...

Coordinate regulation of long non-coding RNAs and protein-coding genes in germfree mice

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The goals of this study were to 1) characterize the tissue-specific expression of lncRNAs and 2) identify and annotate lncRNAs differentially regulated in the absence of gut microbiome.. Although the constitutive expression of lncRNAs was ubiquitous within the enterohepatic (liver and intestine) and the peripheral metabolic tissues (fat and muscle) in conventional mice, differential expression of lncRNAs by lack of...

Analysis of human ES cell differentiation establishes that the dominant isoforms of the lncRNAs RMST and FIRRE are circular

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Analysis of human ES cell differentiation establishes that the dominant isoforms of the lncRNAs RMST and FIRRE are circular. Results: A transcriptome-wide increase in circRNA expression, size, and exon count was observed, with circRNA levels reaching a plateau by day 45. outside of the circRNA [7], is required to confirm circular- ity in individual cases.. CircRNA biogenesis can be promoted...